Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P8R99_RS04785 Genome accession   NZ_CP121160
Coordinates   949007..949606 (+) Length   199 a.a.
NCBI ID   WP_000248792.1    Uniprot ID   Q3K380
Organism   Streptococcus agalactiae strain S5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 944007..954606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS04755 - 944130..944612 (+) 483 WP_000159885.1 S-ribosylhomocysteine lyase -
  P8R99_RS04760 - 944837..946324 (-) 1488 WP_017647110.1 cell division site-positioning protein MapZ family protein -
  P8R99_RS04765 - 946337..947491 (-) 1155 WP_017647109.1 class I SAM-dependent RNA methyltransferase -
  P8R99_RS04775 gpsB 947961..948293 (-) 333 WP_000146544.1 cell division regulator GpsB -
  P8R99_RS04780 - 948414..948932 (-) 519 WP_017647108.1 DUF1273 domain-containing protein -
  P8R99_RS04785 recU 949007..949606 (+) 600 WP_000248792.1 Holliday junction resolvase RecU Machinery gene
  P8R99_RS04790 pbp1a 949593..951833 (+) 2241 WP_017647107.1 penicillin-binding protein PBP1A -
  P8R99_RS04795 pepC 951879..953213 (-) 1335 WP_001293157.1 aminopeptidase C -
  P8R99_RS04800 nadE 953326..954147 (-) 822 WP_000174853.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23101.69 Da        Isoelectric Point: 9.8314

>NTDB_id=736229 P8R99_RS04785 WP_000248792.1 949007..949606(+) (recU) [Streptococcus agalactiae strain S5]
MVNYPHQLIRKTTVTKSKKKKIDFANRGMSFEAAINATNDYYLSHELAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRQKTAMPMKNFHAHQIEHMANVLQQKGICFVLLHFSTLKETYLLPANELISFYQIDKGN
KSMPIDYIRKNGFFVKESAFPQVPYLDIIEEKLLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=736229 P8R99_RS04785 WP_000248792.1 949007..949606(+) (recU) [Streptococcus agalactiae strain S5]
ATGGTTAACTATCCACATCAGCTTATTCGGAAAACAACAGTTACAAAATCAAAGAAAAAGAAAATCGATTTTGCCAACCG
TGGTATGTCATTTGAAGCTGCTATCAATGCAACCAATGACTACTATTTGTCTCACGAATTAGCTGTCATTCATAAGAAAC
CAACGCCAGTACAAATCGTCAAGGTAGATTATCCTAAACGTAGTCGTGCTAAGATTGTAGAAGCTTATTTTAGACAAGCT
TCTACTACTGATTATTCTGGTGTTTACAAAGGTTACTATATTGACTTTGAAGCCAAAGAAACCCGGCAGAAAACTGCTAT
GCCTATGAAAAATTTTCATGCTCACCAAATAGAGCACATGGCAAATGTATTACAGCAAAAAGGGATTTGCTTTGTCTTGC
TTCATTTTTCCACACTTAAGGAAACCTATCTACTCCCTGCTAATGAGTTAATTTCATTTTATCAGATTGATAAAGGCAAT
AAATCAATGCCTATTGATTATATCAGAAAAAATGGATTTTTCGTAAAGGAGAGTGCCTTTCCTCAAGTCCCTTACTTAGA
TATTATTGAAGAAAAATTATTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K380

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.223

98.995

0.477