Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | DO80_RS00100 | Genome accession | NZ_AP019730 |
| Coordinates | 14059..14322 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain TN2wt | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 9059..19322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DO80_RS00070 (DO80_00090) | groES | 9355..9711 (-) | 357 | WP_000671954.1 | co-chaperone GroES | - |
| DO80_RS00080 (DO80_00100) | dnaG | 9987..11666 (+) | 1680 | WP_108304346.1 | DNA primase | - |
| DO80_RS00085 (DO80_00110) | - | 11663..12715 (+) | 1053 | WP_024115846.1 | MnmA/TRMU family protein | - |
| DO80_RS00090 (DO80_00120) | - | 12806..13633 (+) | 828 | WP_108304347.1 | DUF5718 family protein | - |
| DO80_RS00095 (DO80_00130) | comB2 | 13778..14059 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| DO80_RS00100 (DO80_00140) | comB3 | 14059..14322 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| DO80_RS00105 (DO80_00150) | comB4 | 14324..16687 (+) | 2364 | WP_108304348.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| DO80_RS00115 (DO80_00160) | - | 17007..18347 (+) | 1341 | WP_172620318.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=73621 DO80_RS00100 WP_000584955.1 14059..14322(+) (comB3) [Helicobacter pylori strain TN2wt]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=73621 DO80_RS00100 WP_000584955.1 14059..14322(+) (comB3) [Helicobacter pylori strain TN2wt]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |