Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OCJ37_RS14080 Genome accession   NZ_CP106869
Coordinates   3355663..3357048 (-) Length   461 a.a.
NCBI ID   WP_263110228.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3350663..3362048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS14060 (OCJ37_14060) - 3351238..3352962 (+) 1725 WP_263110224.1 IlvD/Edd family dehydratase -
  OCJ37_RS14065 (OCJ37_14065) - 3353182..3353706 (+) 525 WP_263110225.1 RNA polymerase sigma factor -
  OCJ37_RS14070 (OCJ37_14070) - 3353772..3354782 (+) 1011 WP_263113695.1 FecR domain-containing protein -
  OCJ37_RS14075 (OCJ37_14075) - 3355164..3355550 (-) 387 WP_263110227.1 DUF805 domain-containing protein -
  OCJ37_RS14080 (OCJ37_14080) radA 3355663..3357048 (-) 1386 WP_263110228.1 DNA repair protein RadA Machinery gene
  OCJ37_RS14085 (OCJ37_14085) - 3357558..3357983 (+) 426 WP_263110230.1 hypothetical protein -
  OCJ37_RS14090 (OCJ37_14090) - 3358188..3360056 (-) 1869 WP_263113696.1 tetratricopeptide repeat protein -
  OCJ37_RS14095 (OCJ37_14095) - 3360369..3360893 (-) 525 WP_263110231.1 MarR family winged helix-turn-helix transcriptional regulator -
  OCJ37_RS14100 (OCJ37_14100) - 3360892..3361776 (+) 885 WP_263110233.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48390.59 Da        Isoelectric Point: 7.3922

>NTDB_id=736190 OCJ37_RS14080 WP_263110228.1 3355663..3357048(-) (radA) [Xanthomonas sp. AM6]
MAKAKTAYVCGDCGAEYTKWQGQCTECGAWNSLSEIVLESASAAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALAETGI
EQILQHASAARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGSSANQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRALAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGVVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=736190 OCJ37_RS14080 WP_263110228.1 3355663..3357048(-) (radA) [Xanthomonas sp. AM6]
ATGGCGAAGGCGAAAACGGCCTATGTGTGCGGCGACTGCGGCGCCGAATACACCAAGTGGCAGGGCCAGTGCACCGAGTG
CGGCGCATGGAATTCGCTGAGCGAGATCGTGCTGGAAAGCGCGTCGGCGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCAT
CGGCAAGTCGACGCTGCTGCTGCAGGCGCTGGCCAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAGT
CGCTGGCGCAGGTCGCCGGCCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAATGCGCTGGCCGAGACCGGCATC
GAGCAGATCCTGCAGCATGCCAGCGCGGCGCGGCCCAAGCTGATCGTGGCCGATTCGGTGCAGACCCTGTGGACCGAGTC
GCTGACCGCCGCGCCCGGTTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGACTGGTGCGCTATGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTGACCAAGGAGGGCGGCATCGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTATTTCGAGGGTGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTGTCCAACCCGTCGGCGATCTTCCTGTCCGGCAGCAGCG
CCAACCAGCCCGGCAGCTGCGTGATGGTGACGCGCGAGGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTGGAT
GCCTCGCCGCTGTCCAACCCGCGGCGGGTGGCGGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGGCACGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCCTCGCTGCGCGACCGCGCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGCTGCGCGAAGCGGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCGAAGACGGGCGTGGTCAAGGGCATGGAAGTGATCGCGGTGGAGCGCCTGGCGC
AGGCGCTGGAAGCGGCAAGCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.486
  radA Streptococcus mitis SK321

43.355

99.566

0.432
  radA Streptococcus pneumoniae D39

42.888

99.132

0.425
  radA Streptococcus pneumoniae TIGR4

42.888

99.132

0.425
  radA Streptococcus mitis NCTC 12261

42.888

99.132

0.425
  radA Streptococcus pneumoniae R6

42.888

99.132

0.425
  radA Streptococcus pneumoniae Rx1

42.888

99.132

0.425