Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P8R98_RS10785 Genome accession   NZ_CP121159
Coordinates   2190928..2191662 (-) Length   244 a.a.
NCBI ID   WP_000589158.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2185928..2196662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS10770 proB 2186783..2187586 (-) 804 WP_000820349.1 glutamate 5-kinase -
  P8R98_RS10775 - 2187727..2189112 (+) 1386 WP_001872911.1 PTS transporter subunit EIIC -
  P8R98_RS10780 - 2189320..2190924 (-) 1605 WP_001104587.1 ABC transporter permease -
  P8R98_RS10785 pptA 2190928..2191662 (-) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  P8R98_RS10790 - 2191682..2191987 (-) 306 WP_000711208.1 bacteriocin immunity protein -
  P8R98_RS10795 recP/tkt 2192200..2194185 (-) 1986 WP_000141863.1 transketolase Machinery gene
  P8R98_RS10800 - 2194310..2195740 (-) 1431 WP_001217288.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27546.69 Da        Isoelectric Point: 4.6741

>NTDB_id=736167 P8R98_RS10785 WP_000589158.1 2190928..2191662(-) (pptA) [Streptococcus agalactiae strain S1]
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQA
NREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=736167 P8R98_RS10785 WP_000589158.1 2190928..2191662(-) (pptA) [Streptococcus agalactiae strain S1]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGAGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTATTAAAGATGG
TGAGATTTTTGGATTAATCGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAGATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTGAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGATGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCATTA
ACTGGTTTAGATCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTCTTAGCAGTTGCAGAACAATTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGCAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AATAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.655

97.541

0.377
  pptA Streptococcus salivarius strain HSISS4

38.235

97.541

0.373