Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P8R98_RS10690 Genome accession   NZ_CP121159
Coordinates   2168753..2169352 (+) Length   199 a.a.
NCBI ID   WP_000248792.1    Uniprot ID   Q3K380
Organism   Streptococcus agalactiae strain S1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2163753..2174352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS10665 - 2164583..2166070 (-) 1488 WP_001287861.1 cell division site-positioning protein MapZ family protein -
  P8R98_RS10670 - 2166083..2167237 (-) 1155 WP_161501793.1 class I SAM-dependent RNA methyltransferase -
  P8R98_RS10680 gpsB 2167707..2168039 (-) 333 WP_000146544.1 cell division regulator GpsB -
  P8R98_RS10685 - 2168160..2168678 (-) 519 WP_000843101.1 DUF1273 domain-containing protein -
  P8R98_RS10690 recU 2168753..2169352 (+) 600 WP_000248792.1 Holliday junction resolvase RecU Machinery gene
  P8R98_RS10695 pbp1a 2169339..2171585 (+) 2247 WP_278043460.1 penicillin-binding protein PBP1A -
  P8R98_RS10700 pepC 2171631..2172965 (-) 1335 WP_001293158.1 aminopeptidase C -
  P8R98_RS10705 nadE 2173078..2173899 (-) 822 WP_000174854.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23101.69 Da        Isoelectric Point: 9.8314

>NTDB_id=736166 P8R98_RS10690 WP_000248792.1 2168753..2169352(+) (recU) [Streptococcus agalactiae strain S1]
MVNYPHQLIRKTTVTKSKKKKIDFANRGMSFEAAINATNDYYLSHELAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRQKTAMPMKNFHAHQIEHMANVLQQKGICFVLLHFSTLKETYLLPANELISFYQIDKGN
KSMPIDYIRKNGFFVKESAFPQVPYLDIIEEKLLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=736166 P8R98_RS10690 WP_000248792.1 2168753..2169352(+) (recU) [Streptococcus agalactiae strain S1]
ATGGTTAACTATCCACATCAGCTTATTCGGAAAACAACAGTTACAAAATCAAAGAAAAAGAAAATCGATTTTGCCAACCG
TGGTATGTCATTTGAAGCTGCTATCAATGCAACCAATGACTACTATTTGTCTCACGAATTAGCTGTCATTCATAAGAAAC
CAACGCCAGTACAAATCGTCAAGGTAGATTATCCTAAACGTAGTCGTGCTAAGATTGTAGAAGCTTATTTTAGACAAGCT
TCTACTACTGATTATTCTGGTGTTTACAAAGGTTACTATATTGACTTTGAAGCCAAAGAAACCCGGCAGAAAACTGCTAT
GCCTATGAAAAATTTTCATGCTCACCAAATAGAGCACATGGCAAATGTATTACAGCAAAAAGGGATTTGCTTTGTCTTGC
TTCATTTTTCCACACTTAAGGAAACCTATCTACTCCCTGCTAATGAGTTAATTTCATTTTATCAGATTGATAAAGGCAAT
AAATCAATGCCTATTGATTATATCAGAAAAAATGGATTTTTCGTAAAGGAGAGTGCCTTTCCTCAAGTCCCTTACTTAGA
TATTATTGAAGAAAAATTATTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K380

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.223

98.995

0.477