Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P8R98_RS10275 Genome accession   NZ_CP121159
Coordinates   2086423..2087148 (-) Length   241 a.a.
NCBI ID   WP_000912310.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2081423..2092148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS10240 - 2081435..2081731 (-) 297 WP_001140526.1 YlxR family protein -
  P8R98_RS10245 nusA 2081753..2082904 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  P8R98_RS10250 rimP 2082940..2083416 (-) 477 WP_044133272.1 ribosome maturation factor RimP -
  P8R98_RS10260 trmB 2083904..2084539 (-) 636 WP_001266022.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  P8R98_RS10265 - 2084529..2085329 (-) 801 WP_000155919.1 cell cycle regulator CcrZ -
  P8R98_RS10270 pptB 2085387..2086421 (-) 1035 WP_069986137.1 ABC transporter permease Regulator
  P8R98_RS10275 pptA 2086423..2087148 (-) 726 WP_000912310.1 ABC transporter ATP-binding protein Regulator
  P8R98_RS10280 - 2087485..2088965 (+) 1481 Protein_1973 IS1182-like element IS1563 family transposase -
  P8R98_RS10285 - 2089017..2089520 (-) 504 WP_000773455.1 hypothetical protein -
  P8R98_RS10290 - 2089856..2090275 (+) 420 WP_278043456.1 HIT family protein -
  P8R98_RS10295 - 2090272..2090568 (+) 297 WP_000690175.1 hypothetical protein -
  P8R98_RS10300 - 2090632..2091939 (-) 1308 WP_000708163.1 LCP family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26893.30 Da        Isoelectric Point: 4.5217

>NTDB_id=736161 P8R98_RS10275 WP_000912310.1 2086423..2087148(-) (pptA) [Streptococcus agalactiae strain S1]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMERAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=736161 P8R98_RS10275 WP_000912310.1 2086423..2087148(-) (pptA) [Streptococcus agalactiae strain S1]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAATTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAAACACCAAGTCTCTATGAGGAACTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACTGA
TGAAGTTATGGAACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCCATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACGCACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.406

99.17

0.768
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768