Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P8R98_RS09565 Genome accession   NZ_CP121159
Coordinates   1952619..1954277 (-) Length   552 a.a.
NCBI ID   WP_000923611.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1947619..1959277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS09540 - 1949489..1949686 (-) 198 WP_001290370.1 hypothetical protein -
  P8R98_RS09545 - 1949883..1950158 (-) 276 WP_001284634.1 HU family DNA-binding protein -
  P8R98_RS09550 - 1950261..1950863 (-) 603 WP_000806954.1 YpmS family protein -
  P8R98_RS09555 - 1950838..1951677 (-) 840 WP_001035227.1 SGNH/GDSL hydrolase family protein -
  P8R98_RS09560 - 1951670..1952506 (-) 837 WP_000034836.1 DegV family protein -
  P8R98_RS09565 recN 1952619..1954277 (-) 1659 WP_000923611.1 DNA repair protein RecN Machinery gene
  P8R98_RS09570 - 1954289..1954762 (-) 474 WP_000747940.1 ArgR family transcriptional regulator -
  P8R98_RS09575 - 1954749..1955576 (-) 828 WP_001041038.1 TlyA family RNA methyltransferase -
  P8R98_RS09580 - 1955569..1956441 (-) 873 WP_000256280.1 polyprenyl synthetase family protein -
  P8R98_RS09585 - 1956441..1956656 (-) 216 WP_001280898.1 exodeoxyribonuclease VII small subunit -
  P8R98_RS09590 xseA 1956634..1957974 (-) 1341 WP_161501817.1 exodeoxyribonuclease VII large subunit -
  P8R98_RS09595 - 1958100..1958936 (-) 837 WP_000634982.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62513.79 Da        Isoelectric Point: 4.5358

>NTDB_id=736154 P8R98_RS09565 WP_000923611.1 1952619..1954277(-) (recN) [Streptococcus agalactiae strain S1]
MLLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGARASVEVIRHGANKAEIEGFFSIEKNQSLVQLL
EENGIELADELIIRREIFQNGRSVSRINGQMVNLSTLKAVGHYLVDIHGQHDQEELMKPNMHILMLDEFGNTEFNVIKER
YQSLFDAYRQLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTLTNAYLMLDNEE
FSSLSNVRSAMNDLMALEEFDREYKDLSTNLSEAYYVIEEVTKRLGDVIDDLDFDAGLLQEIENRLDVINTITRKYGGDV
NDVLDYFDNITKEYSLLTGSEESSDALEKELKILEHDLIESANQLSLERHKLAKQLENEIKQELTELYMEKADFQVQFTK
GKFNKEGNEIVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLAQVIAIADYQYFIEKISSDSSTVSTVRLLSYEERVEEIAKMLAGNNVTDTARTQAKELLGS

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=736154 P8R98_RS09565 WP_000923611.1 1952619..1954277(-) (recN) [Streptococcus agalactiae strain S1]
ATGCTTTTAGAAATTTCTATTAAGAATTTCGCTATTATCGAAGAAATTTCACTTAATTTTGAAACAGGAATGACTGTTTT
AACTGGTGAGACTGGTGCAGGGAAATCTATCATTATTGATGCTATGAATATGATGTTAGGAGCCCGTGCTAGTGTTGAAG
TGATTCGCCATGGTGCTAACAAAGCAGAAATTGAAGGATTTTTCTCTATTGAAAAAAATCAATCATTAGTCCAATTATTG
GAAGAAAATGGCATTGAATTAGCAGATGAATTAATTATTCGCCGAGAAATCTTTCAAAATGGGCGCAGCGTTAGTCGAAT
TAATGGGCAAATGGTGAATTTATCAACACTAAAAGCTGTGGGGCATTATTTGGTAGACATTCATGGTCAGCATGACCAAG
AGGAACTAATGAAACCTAACATGCACATTCTGATGTTAGATGAATTTGGTAATACAGAATTTAATGTCATAAAAGAGCGT
TATCAAAGTCTTTTTGATGCTTATCGTCAGCTTCGTAAACGTGTATTGGATAAGCAAAAAAATGAACAAGAGAATAAATC
ACGTATTGAAATGCTAGAATTTCAAATAGCAGAAATTGAGTCTGTAGCCCTTAAATCAGATGAAGACCAAACGCTACTCA
AGCAACGTGATAAATTAATGAATCATAAGAATATTGCAGATACTTTGACAAATGCATATCTTATGTTAGATAACGAAGAG
TTTTCAAGTTTATCGAATGTTCGTTCTGCAATGAATGACCTTATGGCTTTAGAAGAATTTGATCGAGAATATAAAGATCT
TTCCACCAATCTTTCAGAAGCTTACTACGTTATTGAAGAAGTTACTAAACGTTTAGGTGACGTTATCGATGATTTAGATT
TTGACGCTGGTTTACTACAAGAAATTGAAAATAGACTAGATGTTATTAACACAATAACGCGAAAATATGGCGGTGATGTG
AATGATGTTTTAGACTATTTTGATAACATTACTAAAGAATATAGTCTATTGACAGGTAGTGAAGAGTCCTCAGATGCTTT
AGAAAAAGAATTAAAGATTTTAGAACACGATTTGATTGAATCAGCAAATCAATTAAGTTTAGAGCGTCATAAGCTAGCTA
AACAATTGGAAAATGAAATCAAACAAGAATTAACAGAGCTTTATATGGAGAAAGCTGATTTCCAAGTTCAATTTACAAAA
GGAAAATTTAATAAAGAAGGGAACGAAATCGTTGAATTTTATATTTCAACGAATCCCGGAGAGGGCTTTAAGCCATTGGT
AAAAGTGGCTTCAGGAGGAGAGTTATCTCGATTGATGTTAGCTATTAAATCTGCTTTTTCACGTAAGGAAGATAAAACTT
CCATTGTATTTGATGAGGTGGATACAGGAGTTTCTGGTCGCGTGGCCCAGGCTATCGCTCAAAAAATTCACAAGATTGGT
AGTCATGGACAAGTTTTAGCAATTTCTCATTTAGCTCAGGTTATTGCAATAGCGGATTACCAATATTTTATTGAAAAAAT
TTCCAGTGACTCTTCAACAGTTTCAACGGTAAGGCTTTTAAGCTATGAAGAACGTGTAGAAGAAATCGCTAAAATGTTGG
CAGGAAACAATGTAACAGACACTGCACGTACTCAAGCTAAAGAATTACTTGGTAGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.563

100

0.447