Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OCI51_RS16040 Genome accession   NZ_CP106862
Coordinates   3096733..3098424 (-) Length   563 a.a.
NCBI ID   WP_257520148.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain FN9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3091733..3103424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCI51_RS16020 (OCI51_16020) - 3092158..3093729 (-) 1572 WP_257520146.1 DUF342 domain-containing protein -
  OCI51_RS16025 (OCI51_16025) - 3094008..3094187 (-) 180 WP_257520147.1 hypothetical protein -
  OCI51_RS16030 (OCI51_16030) spo0A 3094486..3095277 (-) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  OCI51_RS16035 (OCI51_16035) - 3095663..3096610 (-) 948 WP_009370207.1 SpoIVB peptidase S55 domain-containing protein -
  OCI51_RS16040 (OCI51_16040) recN 3096733..3098424 (-) 1692 WP_257520148.1 DNA repair protein RecN Machinery gene
  OCI51_RS16045 (OCI51_16045) ahrC 3098458..3098907 (-) 450 WP_004231170.1 transcriptional regulator AhrC/ArgR -
  OCI51_RS16050 (OCI51_16050) - 3099008..3099826 (-) 819 WP_221680170.1 TlyA family RNA methyltransferase -
  OCI51_RS16055 (OCI51_16055) dxs 3099826..3101727 (-) 1902 WP_263081993.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OCI51_RS16060 (OCI51_16060) - 3101891..3102772 (-) 882 WP_257520149.1 polyprenyl synthetase family protein -
  OCI51_RS16065 (OCI51_16065) xseB 3102776..3103009 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63424.23 Da        Isoelectric Point: 4.6214

>NTDB_id=736146 OCI51_RS16040 WP_257520148.1 3096733..3098424(-) (recN) [Lysinibacillus capsici strain FN9]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KTYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGST
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=736146 OCI51_RS16040 WP_257520148.1 3096733..3098424(-) (recN) [Lysinibacillus capsici strain FN9]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCCATTATCATTGATGCGGTGCATTTACTTGCAGGTGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGAGATTTGAATGATACTGGTAAAAGTATTTG
CCGAGTGAATGGTAAGCTTGTGCCTTTATCGGTACTAAGAGACATTGGGGCAAGTCTCATTGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATAAATTTGCTTGATCAATTTGCAGAAGAAGAGTTGTCGCCGATTCAA
AAAACCTATCGAGCGCAATACGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCGATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAAGCCATTCAAGGT
GAAACAAAAGGGCTTGATTGGATCGGAACGGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAGCAATTCAAAGA
ATCATCTGAGGCAGTTACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTAG
AATTTGACCCTGCGCGTTTAAACGAGGTTGAGCAGCGATTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGTTCGACA
GTGGAAGAGATCTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CCCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGACGCAAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAGCCACCAAAGTC
TTTACCGAAAATTGCATCAGGCGGAGAGTTATCACGAATGATGCTAGCATTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATATTTGATGAGGTGGATACAGGTGTTAGTGGTCGTGTTGCGCAAGCGATTGCAGAGAAAATTGCCGCA
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATCAA
AAAAGAAGTCGAACATGATCGAACGTTTACTTCCTTATCAGAAATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACTGAAATTACAGCTTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.513

100

0.538