Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OCI51_RS05555 Genome accession   NZ_CP106862
Coordinates   1187760..1189019 (+) Length   419 a.a.
NCBI ID   WP_054550950.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain FN9     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1182760..1194019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCI51_RS05525 (OCI51_05525) yfmH 1182840..1184141 (+) 1302 WP_257521315.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OCI51_RS05530 (OCI51_05530) ymfI 1184138..1184866 (+) 729 WP_257521316.1 elongation factor P 5-aminopentanone reductase -
  OCI51_RS05535 (OCI51_05535) - 1184912..1185169 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  OCI51_RS05540 (OCI51_05540) - 1185386..1186171 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  OCI51_RS05545 (OCI51_05545) - 1186188..1187117 (+) 930 WP_175400707.1 RodZ family helix-turn-helix domain-containing protein -
  OCI51_RS05550 (OCI51_05550) pgsA 1187165..1187743 (+) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OCI51_RS05555 (OCI51_05555) cinA 1187760..1189019 (+) 1260 WP_054550950.1 competence/damage-inducible protein A Machinery gene
  OCI51_RS05560 (OCI51_05560) recA 1189181..1190245 (+) 1065 WP_004224934.1 recombinase RecA Machinery gene
  OCI51_RS05565 (OCI51_05565) rny 1190761..1192320 (+) 1560 WP_004224930.1 ribonuclease Y -
  OCI51_RS05570 (OCI51_05570) - 1192549..1193277 (+) 729 WP_257521317.1 YveK family protein -
  OCI51_RS05575 (OCI51_05575) - 1193277..1193978 (+) 702 WP_237497167.1 CpsD/CapB family tyrosine-protein kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45204.58 Da        Isoelectric Point: 4.7703

>NTDB_id=736135 OCI51_RS05555 WP_054550950.1 1187760..1189019(+) (cinA) [Lysinibacillus capsici strain FN9]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQNILDAQTNPTVAPLASDGEVTLRVTAKAATEQQAGQLIKAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQE
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=736135 OCI51_RS05555 WP_054550950.1 1187760..1189019(+) (cinA) [Lysinibacillus capsici strain FN9]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTAGTAGGCGATAATGCAAAGCGTTTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTTGGTCCAACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCATTAATTTTAGCTGGGAGTGAAGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAATGATGGAGGGATTATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAAATATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCCGCAACAGAGCAACAAGCTGGCCAGCTTATTAAGGCAAAGGTT
GCAGAAATACAAGCACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ACTGGATAATGAGCTAACAATTGCGGCTGCAGAAAGTTTAACTGCTGGTTTATTTCAATCTGAACTTGCGGAAATTCCAG
GGGTAGGCAATGCACTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGGCATTTCACAAGAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCAGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGTCTTACAGGAGAAGCAGGTCCCACTGCACATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATAAATGACGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGGAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCCATTATTTAATGCAACTTTTAGAAGAACGTGGCTACACAAAACGATATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.184

98.329

0.513
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.063

90.453

0.399