Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P8R98_RS06950 Genome accession   NZ_CP121159
Coordinates   1382886..1383848 (+) Length   320 a.a.
NCBI ID   WP_000735588.1    Uniprot ID   Q8DZT7
Organism   Streptococcus agalactiae strain S1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377886..1388848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS06925 - 1377947..1379431 (+) 1485 WP_000256021.1 carbon starvation CstA family protein -
  P8R98_RS06930 - 1379632..1380204 (+) 573 WP_001231800.1 L,D-transpeptidase -
  P8R98_RS06935 ylqF 1380480..1381331 (+) 852 WP_000201281.1 ribosome biogenesis GTPase YlqF -
  P8R98_RS06940 - 1381318..1382079 (+) 762 WP_000201089.1 ribonuclease HII -
  P8R98_RS06945 - 1382100..1382648 (+) 549 WP_000136509.1 sugar O-acetyltransferase -
  P8R98_RS06950 ceuB 1382886..1383848 (+) 963 WP_000735588.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  P8R98_RS06955 - 1383845..1384819 (+) 975 WP_000588576.1 iron chelate uptake ABC transporter family permease subunit -
  P8R98_RS06960 - 1384816..1385577 (+) 762 WP_000614755.1 ATP-binding cassette domain-containing protein -
  P8R98_RS06965 - 1385639..1386667 (+) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  P8R98_RS06970 dprA 1386805..1387647 (+) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34880.98 Da        Isoelectric Point: 8.4842

>NTDB_id=736128 P8R98_RS06950 WP_000735588.1 1382886..1383848(+) (ceuB) [Streptococcus agalactiae strain S1]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLTSRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGVAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=736128 P8R98_RS06950 WP_000735588.1 1382886..1383848(+) (ceuB) [Streptococcus agalactiae strain S1]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTGAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAACGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTAACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTATATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AGAATTTAGGGGTTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTAGGTAGTGCCTTTTTCCTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.649

99.688

0.475