Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P8R98_RS00890 Genome accession   NZ_CP121159
Coordinates   155744..156505 (-) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 150744..161505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS00870 purC 152655..153359 (-) 705 WP_001064658.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  P8R98_RS00875 - 153483..153722 (-) 240 WP_000085641.1 phosphopantetheine-binding protein -
  P8R98_RS00880 plsX 153733..154725 (-) 993 WP_000717409.1 phosphate acyltransferase PlsX -
  P8R98_RS00885 - 154803..155681 (-) 879 WP_000420130.1 type II CAAX endopeptidase family protein -
  P8R98_RS00890 recO 155744..156505 (-) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  P8R98_RS00895 - 156495..157670 (-) 1176 WP_000171460.1 pyridoxal phosphate-dependent aminotransferase -
  P8R98_RS00900 - 157778..158746 (-) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  P8R98_RS00905 - 158870..160171 (-) 1302 WP_000746073.1 peptidoglycan hydrolase PcsB -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=736088 P8R98_RS00890 WP_001266269.1 155744..156505(-) (recO) [Streptococcus agalactiae strain S1]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=736088 P8R98_RS00890 WP_001266269.1 155744..156505(-) (recO) [Streptococcus agalactiae strain S1]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628