Detailed information NTG0736020

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P6H86_RS04990
• Genome accession: NZ_CP121157
• Coordinates: 1041092..1042084 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E89
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1036092..1047084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6H86_RS04960 (P6H86_04960)	ispD	1036153..1036863 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P6H86_RS04965 (P6H86_04965)	ispF	1036863..1037342 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P6H86_RS04970 (P6H86_04970)	truD	1037339..1038388 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
P6H86_RS04975 (P6H86_04975)	surE	1038369..1039130 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P6H86_RS04980 (P6H86_04980)	pcm	1039124..1039750 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P6H86_RS04985 (P6H86_04985)	nlpD	1039935..1041029 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
P6H86_RS04990 (P6H86_04990)	rpoS	1041092..1042084 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P6H86_RS04995 (P6H86_04995)	ygbN	1042178..1043542 (-)	1365	WP_000104441.1	GntP family transporter	-
P6H86_RS05000 (P6H86_05000)	ygbM	1043631..1044407 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
P6H86_RS05005 (P6H86_05005)	ygbL	1044412..1045050 (-)	639	WP_001278994.1	aldolase	-
P6H86_RS05010 (P6H86_05010)	otnK	1045047..1046309 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=736020 P6H86_RS04990 WP_000081550.1 1041092..1042084(+) (rpoS) [Escherichia coli strain E89]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=736020 P6H86_RS04990 WP_000081550.1 1041092..1042084(+) (rpoS) [Escherichia coli strain E89]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715