Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NBH81_RS01790 Genome accession   NZ_CP106828
Coordinates   373225..374664 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain jsyz553301     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368225..379664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBH81_RS01760 (NBH81_01760) mlaF 368802..369602 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  NBH81_RS01765 (NBH81_01765) - 369810..370805 (+) 996 WP_005356672.1 KpsF/GutQ family sugar-phosphate isomerase -
  NBH81_RS01770 (NBH81_01770) kdsC 370805..371359 (+) 555 WP_108542371.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NBH81_RS01775 (NBH81_01775) lptC 371356..371916 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  NBH81_RS01780 (NBH81_01780) lptA 371903..372430 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  NBH81_RS01785 (NBH81_01785) lptB 372434..373159 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  NBH81_RS01790 (NBH81_01790) rpoN/rpoN1 373225..374664 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  NBH81_RS01795 (NBH81_01795) hpf 374685..374972 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  NBH81_RS01800 (NBH81_01800) ptsN 374975..375421 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NBH81_RS01805 (NBH81_01805) rapZ 375467..376333 (+) 867 WP_263085239.1 RNase adapter RapZ -
  NBH81_RS01810 (NBH81_01810) npr 376354..376626 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  NBH81_RS01815 (NBH81_01815) - 376644..378548 (-) 1905 WP_263085240.1 transcription antiterminator -
  NBH81_RS01820 (NBH81_01820) - 378655..379395 (-) 741 WP_263085241.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=735939 NBH81_RS01790 WP_005336331.1 373225..374664(+) (rpoN/rpoN1) [Aeromonas veronii strain jsyz553301]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=735939 NBH81_RS01790 WP_005336331.1 373225..374664(+) (rpoN/rpoN1) [Aeromonas veronii strain jsyz553301]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACTTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGTGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTTCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCAGTCACTAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCGGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAATATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491