Detailed information NTG0735938

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P6H85_RS05530
• Genome accession: NZ_CP121155
• Coordinates: 1148834..1149826 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E67
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1143834..1154826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6H85_RS05500 (P6H85_05500)	ispD	1143895..1144605 (+)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P6H85_RS05505 (P6H85_05505)	ispF	1144605..1145084 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P6H85_RS05510 (P6H85_05510)	truD	1145081..1146130 (+)	1050	WP_000568908.1	tRNA pseudouridine(13) synthase TruD	-
P6H85_RS05515 (P6H85_05515)	surE	1146111..1146872 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P6H85_RS05520 (P6H85_05520)	pcm	1146866..1147492 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P6H85_RS05525 (P6H85_05525)	nlpD	1147677..1148771 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
P6H85_RS05530 (P6H85_05530)	rpoS	1148834..1149826 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P6H85_RS05535 (P6H85_05535)	-	1149947..1150354 (-)	408	WP_001208071.1	MarR family transcriptional regulator	-
P6H85_RS05540 (P6H85_05540)	-	1150501..1151094 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
P6H85_RS05545 (P6H85_05545)	-	1151094..1152521 (+)	1428	WP_000863203.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
P6H85_RS05550 (P6H85_05550)	-	1152532..1152768 (+)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
P6H85_RS05555 (P6H85_05555)	pphB	1152810..1153466 (-)	657	WP_001141294.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=735938 P6H85_RS05530 WP_000081550.1 1148834..1149826(+) (rpoS) [Escherichia coli strain E67]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=735938 P6H85_RS05530 WP_000081550.1 1148834..1149826(+) (rpoS) [Escherichia coli strain E67]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715