Detailed information NTG0735775

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P6H31_RS05090
• Genome accession: NZ_CP121151
• Coordinates: 1043327..1044319 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E47
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1038327..1049319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6H31_RS05060 (P6H31_05060)	ispD	1038388..1039098 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P6H31_RS05065 (P6H31_05065)	ispF	1039098..1039577 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P6H31_RS05070 (P6H31_05070)	truD	1039574..1040623 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
P6H31_RS05075 (P6H31_05075)	surE	1040604..1041365 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P6H31_RS05080 (P6H31_05080)	pcm	1041359..1041985 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P6H31_RS05085 (P6H31_05085)	nlpD	1042170..1043264 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
P6H31_RS05090 (P6H31_05090)	rpoS	1043327..1044319 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P6H31_RS05095 (P6H31_05095)	-	1044440..1044847 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
P6H31_RS05100 (P6H31_05100)	-	1044994..1045587 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
P6H31_RS05105 (P6H31_05105)	-	1045587..1047014 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
P6H31_RS05110 (P6H31_05110)	-	1047025..1047261 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
P6H31_RS05115 (P6H31_05115)	ygbN	1047300..1048664 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=735775 P6H31_RS05090 WP_000081550.1 1043327..1044319(+) (rpoS) [Escherichia coli strain E47]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=735775 P6H31_RS05090 WP_000081550.1 1043327..1044319(+) (rpoS) [Escherichia coli strain E47]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715