Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE36_RS11125 Genome accession   NZ_CP106817
Coordinates   2107796..2108113 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10574     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102796..2113113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE36_RS11090 (LLE36_11090) - 2103876..2104238 (-) 363 Protein_2139 pilin -
  LLE36_RS11095 (LLE36_11095) - 2104278..2104682 (-) 405 Protein_2140 pilin -
  LLE36_RS11100 (LLE36_11100) - 2105219..2105635 (-) 417 Protein_2141 pilin -
  LLE36_RS11105 (LLE36_11105) lpxC 2105735..2106658 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE36_RS11920 - 2107150..2107872 (-) 723 WP_405083754.1 pilin -
  LLE36_RS11125 (LLE36_11125) pilE 2107796..2108113 (-) 318 WP_003697861.1 pilin Machinery gene
  LLE36_RS11130 (LLE36_11130) - 2108486..2108617 (-) 132 WP_010356054.1 hypothetical protein -
  LLE36_RS11135 (LLE36_11135) - 2108699..2109387 (-) 689 Protein_2146 SprT family zinc-dependent metalloprotease -
  LLE36_RS11140 (LLE36_11140) - 2109384..2110127 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LLE36_RS11145 (LLE36_11145) gmhB 2110157..2110720 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  LLE36_RS11150 (LLE36_11150) - 2110863..2112515 (+) 1653 WP_003699337.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=735744 LLE36_RS11125 WP_003697861.1 2107796..2108113(-) (pilE) [Neisseria gonorrhoeae strain 10574]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=735744 LLE36_RS11125 WP_003697861.1 2107796..2108113(-) (pilE) [Neisseria gonorrhoeae strain 10574]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41