Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE36_RS00265 Genome accession   NZ_CP106817
Coordinates   52707..55850 (-) Length   1047 a.a.
NCBI ID   WP_263074845.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10574     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47707..60850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE36_RS00245 (LLE36_00245) - 49096..49485 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  LLE36_RS00255 (LLE36_00255) - 49648..50027 (-) 380 Protein_48 VOC family protein -
  LLE36_RS00260 (LLE36_00260) carA 50081..51214 (-) 1134 WP_003699436.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  LLE36_RS00265 (LLE36_00265) pilC 52707..55850 (-) 3144 WP_263074845.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE36_RS00270 (LLE36_00270) apbC 57295..58374 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  LLE36_RS00280 (LLE36_00280) - 58748..59257 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  LLE36_RS00285 (LLE36_00285) nadR 59598..60038 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  LLE36_RS00290 (LLE36_00290) hpaC 60153..60653 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1047 a.a.        Molecular weight: 115090.83 Da        Isoelectric Point: 9.9409

>NTDB_id=735699 LLE36_RS00265 WP_263074845.1 52707..55850(-) (pilC) [Neisseria gonorrhoeae strain 10574]
MNKTLKRRVFRHTALYAAILMFSHTARLGGRRAPPMAETREYAIIMNGRNQPEVQWSVPSSIKYKDRKRKYTHYNYPQGG
SSVSFNNSDELVSQQSGTAVFGTATYLPPYGKVSGFDTDSLKGRANAVDWIRTTRIALAGYSYAGVVCNSTTGCPKLVYK
TRFSFDNPDLAKTGSRLNRHTEPSRDNSPIYKLKDYPWLGVSFNLGAEGTAKDGKVTNKLVSSFDENNSNSNQNLVYTTE
GHNISLGNWQRESTAMAYYLNAKLHLLDKKKIKDITSKTVRLGVLKPSIDVRKGNTELSGILSFWATWDIKDTGQIPVKL
GLPQVKAGRCTNAAHPNPKVKPLSPALTAPALWFGPAQNGKVQMYSASVSTYPGSSSSRIFLQELKTKTDPGRPGRHSLA
ALNERDIKSREPNFNSRQTVIRLPGGVYRIAPGNSGRVAGFNDNDGKNDTFGIYKDRLVIPEPDEWSEVLLPWTARYYGN
DDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATAANDGMVHLFKRNGTDQRGYELK
LSYIPGTMPRQYFDNDTSALKDSTLAQELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAYALD
LTKIDNSNLTGVSMFDVKNESKNNGVKLGYTVGTPQIGKTQNGTYSAFLASGYAAKQIDDSTNKTALYVYDLKDTLGTPI
AKIEVKDGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSGDNPSKWTVRTIFQGTKPITSAPAVSRLADKRVVIF
GTGSDLSEQDVVDKDQQYIYGIFDDDKGTVKVTVQNGTGGGLLEQVLKEENKTLFLNKGSDGSGSKGWVVKLKEGQRVTV
KPTVVLRTAFVTIRKYKDDGCGADTAILGINTADGGALTPRSARPIVPEANKDVAQYSGHKTTSKGKSIPIGCMEKGGKT
VCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRL
SWREVFF

Nucleotide


Download         Length: 3144 bp        

>NTDB_id=735699 LLE36_RS00265 WP_263074845.1 52707..55850(-) (pilC) [Neisseria gonorrhoeae strain 10574]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGCCCG
CCTGGGGGGTCGGCGGGCGCCTCCTATGGCGGAAACCCGTGAATACGCTATTATCATGAACGGGCGAAACCAGCCCGAGG
TACAGTGGAGTGTGCCATCTTCAATAAAGTACAAAGACAGGAAGCGCAAATATACTCATTATAATTACCCACAAGGAGGA
AGCTCTGTCTCATTCAACAATAGCGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCT
GCCGCCCTACGGCAAGGTTTCCGGTTTTGATACCGATAGTCTGAAAGGGCGCGCCAATGCCGTTGATTGGATTCGTACCA
CCCGCATCGCGCTGGCAGGCTACAGCTACGCCGGTGTCGTATGCAACAGCACCACAGGCTGTCCCAAACTTGTCTATAAA
ACCCGATTTTCCTTCGATAATCCCGACTTGGCAAAAACAGGAAGCAGGCTGAATAGGCACACAGAGCCAAGCCGCGACAA
TTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGCCAAAGATG
GTAAGGTAACCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACCACGGAA
GGCCACAATATTTCCTTGGGCAACTGGCAGCGCGAAAGTACCGCCATGGCCTATTATCTGAACGCCAAACTGCACCTGCT
GGACAAAAAAAAGATTAAAGATATCACCAGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGCGGAAAG
GAAATACGGAGCTTAGCGGCATTCTATCTTTTTGGGCTACGTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTC
GGCCTGCCGCAAGTCAAAGCCGGGCGCTGCACCAACGCCGCCCACCCCAATCCCAAGGTCAAACCCCTTTCGCCGGCACT
GACCGCCCCCGCGCTGTGGTTCGGCCCTGCGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCG
GCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTAAAACCGACCCCGGCAGGCCCGGCCGGCATTCCCTCGCC
GCTTTGAATGAACGAGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTCATCCGATTGCCGGGCGGCGT
GTACCGGATCGCCCCGGGCAATAGCGGCCGGGTCGCGGGTTTTAATGACAATGACGGCAAAAACGACACTTTCGGCATCT
ACAAGGACAGGCTCGTCATACCTGAGCCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACGGCCCGGTATTACGGTAAT
GACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCGCAT
CCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGT
ATCTGGCAACCGCCGCGAACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTACGAACTGAAG
CTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCAAAGACTCCACCCTCGCCCA
AGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTA
CAGATGACCAGGACAGGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTTGGCGGCAGAGGCGCATACGCCTTGGAT
TTGACCAAAATCGACAACAGCAACCTGACCGGCGTTTCCATGTTTGATGTCAAAAACGAGAGTAAAAATAATGGCGTGAA
ATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCACATACTCCGCCTTCCTCGCTTCCGGTTATG
CGGCTAAACAAATTGACGACTCAACAAATAAAACCGCGCTGTATGTGTATGATTTGAAAGACACCTTAGGTACGCCGATT
GCAAAAATCGAAGTGAAGGACGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGA
TATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGGCGACAATCCGTCCAAATGGACTGTAC
GCACTATTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTCATCTTC
GGTACGGGCAGCGATTTGAGTGAACAGGATGTAGTCGATAAGGATCAACAATATATTTACGGTATCTTTGACGACGATAA
GGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAGTGCTTAAAGAGGAAAATAAAACAT
TATTCCTGAACAAGGGATCCGACGGATCGGGCAGTAAGGGGTGGGTAGTGAAGCTGAAGGAAGGACAGCGCGTTACCGTC
AAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAAGTATAAAGACGACGGCTGCGGCGCGGATACCGCCAT
TTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGAAGCCAATAAGGATG
TCGCACAATATTCCGGCCATAAGACAACCTCCAAAGGCAAATCCATCCCTATAGGTTGTATGGAAAAAGGCGGTAAAACC
GTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGTTATCTGGACGAAAAGAAAACAGACGATTTCCCCGT
CACGGCAGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCCA
AAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTA
AGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(520-856)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

68.709

100

0.696