Detailed information
Bioinformatically predicted
Overview
| Name | pilK | Type | Machinery gene |
| Locus tag | OCL41_RS02355 | Genome accession | NZ_CP106815 |
| Coordinates | 453031..453642 (+) | Length | 203 a.a. |
| NCBI ID | WP_033911077.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10562 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 443962..492311 | 453031..453642 | within | 0 |
Gene organization within MGE regions
Location: 443962..492311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCL41_RS02305 (OCL41_02305) | - | 443962..445038 (-) | 1077 | WP_229931480.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| OCL41_RS02310 (OCL41_02310) | cysW | 445035..445895 (-) | 861 | WP_003699617.1 | sulfate ABC transporter permease subunit CysW | - |
| OCL41_RS02315 (OCL41_02315) | cysT | 446084..446911 (-) | 828 | WP_003699619.1 | sulfate ABC transporter permease subunit CysT | - |
| OCL41_RS02320 (OCL41_02320) | - | 447092..447424 (+) | 333 | WP_003687908.1 | hypothetical protein | - |
| OCL41_RS02325 (OCL41_02325) | - | 447751..448260 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| OCL41_RS02330 (OCL41_02330) | - | 448492..449073 (-) | 582 | WP_003690895.1 | superoxide dismutase | - |
| OCL41_RS02335 (OCL41_02335) | dnaB | 449237..450643 (+) | 1407 | WP_003699622.1 | replicative DNA helicase | - |
| OCL41_RS02340 (OCL41_02340) | pilH | 450797..451462 (+) | 666 | WP_229931479.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| OCL41_RS02345 (OCL41_02345) | pilV | 451494..452105 (+) | 612 | WP_003699626.1 | type IV pilus modification protein PilV | Machinery gene |
| OCL41_RS02350 (OCL41_02350) | pilJ | 452102..453052 (+) | 951 | WP_003699627.1 | PilW family protein | Machinery gene |
| OCL41_RS02355 (OCL41_02355) | pilK | 453031..453642 (+) | 612 | WP_033911077.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| OCL41_RS02360 (OCL41_02360) | pilL | 453644..454117 (+) | 474 | WP_172760650.1 | PilX family type IV pilin | Machinery gene |
| OCL41_RS02365 (OCL41_02365) | - | 454187..454495 (-) | 309 | WP_025456177.1 | AzlD family protein | - |
| OCL41_RS02370 (OCL41_02370) | - | 454492..455202 (-) | 711 | Protein_465 | AzlC family ABC transporter permease | - |
| OCL41_RS02375 (OCL41_02375) | dut | 455368..455820 (+) | 453 | WP_003699637.1 | dUTP diphosphatase | - |
| OCL41_RS02380 (OCL41_02380) | dapC | 455896..457083 (+) | 1188 | WP_003699639.1 | succinyldiaminopimelate transaminase | - |
| OCL41_RS02385 (OCL41_02385) | yaaA | 457239..458018 (+) | 780 | WP_003699641.1 | peroxide stress protein YaaA | - |
| OCL41_RS02400 (OCL41_02400) | - | 458548..459741 (+) | 1194 | WP_017146746.1 | phage integrase central domain-containing protein | - |
| OCL41_RS02405 (OCL41_02405) | - | 460097..460366 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| OCL41_RS02410 (OCL41_02410) | - | 460561..461244 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| OCL41_RS11815 | - | 461525..461791 (-) | 267 | Protein_472 | hypothetical protein | - |
| OCL41_RS02420 (OCL41_02420) | - | 461902..462117 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| OCL41_RS02425 (OCL41_02425) | - | 462169..462660 (-) | 492 | WP_033911206.1 | siphovirus Gp157 family protein | - |
| OCL41_RS02430 (OCL41_02430) | - | 462657..462839 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| OCL41_RS02435 (OCL41_02435) | - | 462979..463665 (-) | 687 | WP_010357532.1 | phage replication initiation protein, NGO0469 family | - |
| OCL41_RS02440 (OCL41_02440) | - | 463734..463895 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| OCL41_RS02445 (OCL41_02445) | - | 463892..464167 (-) | 276 | WP_033911205.1 | NGO1622 family putative holin | - |
| OCL41_RS02450 (OCL41_02450) | - | 464320..464652 (-) | 333 | WP_003695500.1 | hypothetical protein | - |
| OCL41_RS02455 (OCL41_02455) | - | 464794..464937 (-) | 144 | WP_229931536.1 | hypothetical protein | - |
| OCL41_RS02460 (OCL41_02460) | - | 464934..465410 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| OCL41_RS02465 (OCL41_02465) | - | 465443..465643 (-) | 201 | WP_003692842.1 | hypothetical protein | - |
| OCL41_RS02470 (OCL41_02470) | - | 466127..466345 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| OCL41_RS02475 (OCL41_02475) | - | 466362..466721 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| OCL41_RS02480 (OCL41_02480) | - | 466722..467261 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| OCL41_RS02485 (OCL41_02485) | - | 467421..468137 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| OCL41_RS02490 (OCL41_02490) | - | 468518..468745 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| OCL41_RS02495 (OCL41_02495) | - | 468863..469330 (+) | 468 | WP_229692802.1 | hypothetical protein | - |
| OCL41_RS02500 (OCL41_02500) | - | 469425..469928 (+) | 504 | WP_010360005.1 | hypothetical protein | - |
| OCL41_RS02505 (OCL41_02505) | - | 469925..471286 (+) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| OCL41_RS02510 (OCL41_02510) | - | 471303..471533 (+) | 231 | WP_012503490.1 | hypothetical protein | - |
| OCL41_RS02515 (OCL41_02515) | - | 471624..472118 (+) | 495 | WP_047923539.1 | DUF3310 domain-containing protein | - |
| OCL41_RS02520 (OCL41_02520) | - | 472313..472462 (+) | 150 | WP_033911194.1 | phage associated protein | - |
| OCL41_RS02525 (OCL41_02525) | - | 472490..472771 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| OCL41_RS02530 (OCL41_02530) | - | 472762..473199 (+) | 438 | WP_123794336.1 | RusA family crossover junction endodeoxyribonuclease | - |
| OCL41_RS02535 (OCL41_02535) | - | 473192..473497 (+) | 306 | WP_025456182.1 | DUF1364 domain-containing protein | - |
| OCL41_RS02540 (OCL41_02540) | - | 473494..473877 (+) | 384 | WP_003699764.1 | recombination protein NinB | - |
| OCL41_RS02545 (OCL41_02545) | - | 473868..474386 (+) | 519 | WP_003693459.1 | HNH endonuclease | - |
| OCL41_RS02550 (OCL41_02550) | - | 474451..474873 (+) | 423 | WP_003690919.1 | hypothetical protein | - |
| OCL41_RS02555 (OCL41_02555) | - | 474873..475412 (+) | 540 | WP_003693457.1 | hypothetical protein | - |
| OCL41_RS02560 (OCL41_02560) | - | 475393..476667 (+) | 1275 | WP_309491694.1 | PBSX family phage terminase large subunit | - |
| OCL41_RS02565 (OCL41_02565) | - | 476652..478919 (+) | 2268 | WP_229433533.1 | hypothetical protein | - |
| OCL41_RS02570 (OCL41_02570) | - | 479157..480353 (+) | 1197 | WP_003693452.1 | hypothetical protein | - |
| OCL41_RS02575 (OCL41_02575) | - | 480350..487657 (+) | 7308 | WP_229931478.1 | PLxRFG domain-containing protein | - |
| OCL41_RS02580 (OCL41_02580) | - | 488283..489578 (+) | 1296 | WP_003693441.1 | DUF4043 family protein | - |
| OCL41_RS02585 (OCL41_02585) | - | 489636..490109 (+) | 474 | WP_003693439.1 | hypothetical protein | - |
| OCL41_RS02590 (OCL41_02590) | - | 490115..490600 (+) | 486 | WP_003693438.1 | hypothetical protein | - |
| OCL41_RS02595 (OCL41_02595) | - | 490597..491271 (+) | 675 | WP_003693436.1 | hypothetical protein | - |
| OCL41_RS02600 (OCL41_02600) | - | 491274..491423 (+) | 150 | WP_017146863.1 | hypothetical protein | - |
| OCL41_RS02605 (OCL41_02605) | - | 491460..492311 (-) | 852 | WP_003699775.1 | Bro-N domain-containing protein | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 22068.97 Da Isoelectric Point: 7.5813
>NTDB_id=735665 OCL41_RS02355 WP_033911077.1 453031..453642(+) (pilK) [Neisseria gonorrhoeae strain 10562]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ
Nucleotide
Download Length: 612 bp
>NTDB_id=735665 OCL41_RS02355 WP_033911077.1 453031..453642(+) (pilK) [Neisseria gonorrhoeae strain 10562]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilK | Neisseria gonorrhoeae MS11 |
95.567 |
100 |
0.956 |