Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCL41_RS00265 Genome accession   NZ_CP106815
Coordinates   52427..55549 (-) Length   1040 a.a.
NCBI ID   WP_263057155.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47427..60549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL41_RS00245 (OCL41_00245) - 48816..49205 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  OCL41_RS00255 (OCL41_00255) - 49368..49747 (-) 380 Protein_48 VOC family protein -
  OCL41_RS00260 (OCL41_00260) carA 49801..50934 (-) 1134 WP_003699436.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  OCL41_RS00265 (OCL41_00265) pilC 52427..55549 (-) 3123 WP_263057155.1 PilC family type IV pilus tip adhesin Machinery gene
  OCL41_RS00270 (OCL41_00270) apbC 56994..58073 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  OCL41_RS00280 (OCL41_00280) - 58447..58956 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  OCL41_RS00285 (OCL41_00285) nadR 59297..59737 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  OCL41_RS00290 (OCL41_00290) hpaC 59852..60352 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1040 a.a.        Molecular weight: 114267.82 Da        Isoelectric Point: 9.8737

>NTDB_id=735650 OCL41_RS00265 WP_263057155.1 52427..55549(-) (pilC) [Neisseria gonorrhoeae strain 10562]
MNKTLKRRVFRHTALYAAILMFSHTGGAMAETREYAIIMNGRNQPEVQWSVPSSIKYKDRKRKYTHYNYPQGGSSVSFNN
SDELVSQQSGTAVFGTATYLPPYGKVSGFDTDSLKGRANAVDWIRTTRIALAGYSYAGVVCNSTTGCPKLVYKTRFSFDN
PDLAKTGSRLNRHTEPSRDNSPIYKLKDYPWLGVSFNLGAEGTAKDGKVTNKLVSSFDENNSNSNQNLVYTTEGHNISLG
NWQRESTAMAYYLNAKLHLLDKKKIKDITSKTVRLGVLKPSIDVRKGNTELSGILSFWATWDIKDTGQIPVKLGLPQVKA
GRCTNAAHPNPKVKPLSPALTAPALWFGPAQNGKVQMYSASVSTYPGSSSSRIFLQELKTKTDPGRPGRHSLAALNERDI
KSREPNFNSRQTVIRLPGGVYRIAPGNSGRVAGFNDNDGKNDTFGIYKDRLVIPEPDEWSEVLLPWTARYYGNDDIFKTF
NQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATAANDGMVHLFKRNGTDQRGYELKLSYIPGT
MPRQYFDNDTSALKDSTLAQELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAYALDLTKIDNS
NLTGVSMFDVKNESKNNGVKLGYTVGTPQIGKTQNGTYSAFLASGYAAKQIDDSTNKTALYVYDLKDTLGTPIAKIEVKD
GKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSGDNPSKWTVRTIFQGTKPITSAPAVSRLADKRVVIFGTGSDLS
EQDVVDKDQQYIYGIFDDDKGTVKVTVQNGTGGGLLEQVLKEENKTLFLNKGSDGSGSKGWVVKLKEGQRVTVKPTVVLR
TAFVTIRKYKDDGCGADTAILGINTADGGALTPRSARPIVPEANKDVAQYSGHKTTSKGKSIPIGCMEKGGKTVCPNGYV
YDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3123 bp        

>NTDB_id=735650 OCL41_RS00265 WP_263057155.1 52427..55549(-) (pilC) [Neisseria gonorrhoeae strain 10562]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGGGG
GGCGATGGCGGAAACCCGTGAATACGCTATTATCATGAACGGGCGAAACCAGCCCGAGGTACAGTGGAGTGTGCCATCTT
CAATAAAGTACAAAGACAGGAAGCGCAAATATACTCATTATAATTACCCACAAGGAGGAAGCTCTGTCTCATTCAACAAT
AGCGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTC
CGGTTTTGATACCGATAGTCTGAAAGGGCGCGCCAATGCCGTTGATTGGATTCGTACCACCCGCATCGCGCTGGCAGGCT
ACAGCTACGCCGGTGTCGTATGCAACAGCACCACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTTCCTTCGATAAT
CCCGACTTGGCAAAAACAGGAAGCAGGCTGAATAGGCACACAGAGCCAAGCCGCGACAATTCGCCCATTTACAAATTGAA
GGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGCCAAAGATGGTAAGGTAACCAACAAATTGG
TATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACCACGGAAGGCCACAATATTTCCTTGGGC
AACTGGCAGCGCGAAAGTACCGCCATGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAAAGATTAAAGA
TATCACCAGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGCGGAAAGGAAATACGGAGCTTAGCGGCA
TTCTATCTTTTTGGGCTACGTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCC
GGGCGCTGCACCAACGCCGCCCACCCCAATCCCAAGGTCAAACCCCTTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTT
CGGCCCTGCGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGGCAGTTCGAGCAGCCGCATCT
TCCTCCAAGAGCTGAAAACTAAAACCGACCCCGGCAGGCCCGGCCGGCATTCCCTCGCCGCTTTGAATGAACGAGATATC
AAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTCATCCGATTGCCGGGCGGCGTGTACCGGATCGCCCCGGGCAA
TAGCGGCCGGGTCGCGGGTTTTAATGACAATGACGGCAAAAACGACACTTTCGGCATCTACAAGGACAGGCTCGTCATAC
CTGAGCCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACGGCCCGGTATTACGGTAATGACGATATATTTAAAACATTC
AACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCGCATCCGCACAAAAGAAGATGACAA
TGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGTATCTGGCAACCGCCGCGAACG
ACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTACGAACTGAAGCTCAGCTACATCCCCGGCACG
ATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCAAAGACTCCACCCTCGCCCAAGAGCTGCGCACCTTTGCCGA
AAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAGGACAGGCAAA
AACATTTCTTTATGTTTGGTGCGATGGGCCTTGGCGGCAGAGGCGCATACGCCTTGGATTTGACCAAAATCGACAACAGC
AACCTGACCGGCGTTTCCATGTTTGATGTCAAAAACGAGAGTAAAAATAATGGCGTGAAATTAGGCTACACCGTCGGTAC
GCCGCAAATCGGCAAAACCCAAAACGGCACATACTCCGCCTTCCTCGCTTCCGGTTATGCGGCTAAACAAATTGACGACT
CAACAAATAAAACCGCGCTGTATGTGTATGATTTGAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGAC
GGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCG
GGGCGGCAATATGTACCGCTTTGATTTGAGCGGCGACAATCCGTCCAAATGGACTGTACGCACTATTTTCCAAGGCACAA
AACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTCATCTTCGGTACGGGCAGCGATTTGAGT
GAACAGGATGTAGTCGATAAGGATCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGTTAAGGTAACGGT
ACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAGTGCTTAAAGAGGAAAATAAAACATTATTCCTGAACAAGGGATCCG
ACGGATCGGGCAGTAAGGGGTGGGTAGTGAAGCTGAAGGAAGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGT
ACCGCCTTCGTAACCATCCGCAAGTATAAAGACGACGGCTGCGGCGCGGATACCGCCATTTTGGGCATCAATACCGCCGA
CGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGAAGCCAATAAGGATGTCGCACAATATTCCGGCCATA
AGACAACCTCCAAAGGCAAATCCATCCCTATAGGTTGTATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGATATGTT
TACGACAAGCCGGTTAATGTGCGTTATCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGG
CGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGC
TGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTC
TGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(513-849)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

68.655

100

0.697