Detailed information NTG0735614

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P6H07_RS05530
• Genome accession: NZ_CP121147
• Coordinates: 1148832..1149824 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E20
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1143832..1154824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6H07_RS05500 (P6H07_05500)	ispD	1143893..1144603 (+)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P6H07_RS05505 (P6H07_05505)	ispF	1144603..1145082 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P6H07_RS05510 (P6H07_05510)	truD	1145079..1146128 (+)	1050	WP_000568908.1	tRNA pseudouridine(13) synthase TruD	-
P6H07_RS05515 (P6H07_05515)	surE	1146109..1146870 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P6H07_RS05520 (P6H07_05520)	pcm	1146864..1147490 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P6H07_RS05525 (P6H07_05525)	nlpD	1147675..1148769 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
P6H07_RS05530 (P6H07_05530)	rpoS	1148832..1149824 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P6H07_RS05535 (P6H07_05535)	-	1149945..1150352 (-)	408	WP_001208071.1	MarR family transcriptional regulator	-
P6H07_RS05540 (P6H07_05540)	-	1150499..1151092 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
P6H07_RS05545 (P6H07_05545)	-	1151092..1152519 (+)	1428	WP_000863203.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
P6H07_RS05550 (P6H07_05550)	-	1152530..1152766 (+)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
P6H07_RS05555 (P6H07_05555)	pphB	1152808..1153464 (-)	657	WP_001141294.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=735614 P6H07_RS05530 WP_000081550.1 1148832..1149824(+) (rpoS) [Escherichia coli strain E20]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=735614 P6H07_RS05530 WP_000081550.1 1148832..1149824(+) (rpoS) [Escherichia coli strain E20]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715