Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | OCL46_RS02350 | Genome accession | NZ_CP106811 |
| Coordinates | 452906..453856 (+) | Length | 316 a.a. |
| NCBI ID | WP_003699627.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10531 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 440118..493546 | 452906..453856 | within | 0 |
Gene organization within MGE regions
Location: 440118..493546
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCL46_RS02285 (OCL46_02285) | - | 440118..441101 (+) | 984 | WP_003687900.1 | ribose-phosphate pyrophosphokinase | - |
| OCL46_RS02290 (OCL46_02290) | - | 441168..441740 (+) | 573 | WP_003687901.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| OCL46_RS02295 (OCL46_02295) | - | 441866..443035 (-) | 1170 | WP_003687902.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| OCL46_RS02300 (OCL46_02300) | ilvA | 443184..444710 (+) | 1527 | WP_229930545.1 | threonine ammonia-lyase, biosynthetic | - |
| OCL46_RS02305 (OCL46_02305) | - | 444766..445842 (-) | 1077 | WP_003692814.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| OCL46_RS02310 (OCL46_02310) | cysW | 445839..446699 (-) | 861 | WP_003699617.1 | sulfate ABC transporter permease subunit CysW | - |
| OCL46_RS02315 (OCL46_02315) | cysT | 446888..447715 (-) | 828 | WP_003699619.1 | sulfate ABC transporter permease subunit CysT | - |
| OCL46_RS02320 (OCL46_02320) | - | 447896..448228 (+) | 333 | WP_003687908.1 | hypothetical protein | - |
| OCL46_RS02325 (OCL46_02325) | - | 448555..449064 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| OCL46_RS02330 (OCL46_02330) | - | 449296..449877 (-) | 582 | WP_003690895.1 | superoxide dismutase | - |
| OCL46_RS02335 (OCL46_02335) | dnaB | 450041..451447 (+) | 1407 | WP_003699622.1 | replicative DNA helicase | - |
| OCL46_RS02340 (OCL46_02340) | pilH | 451601..452266 (+) | 666 | WP_003699624.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| OCL46_RS02345 (OCL46_02345) | pilV | 452298..452909 (+) | 612 | WP_003699626.1 | type IV pilus modification protein PilV | Machinery gene |
| OCL46_RS02350 (OCL46_02350) | pilJ | 452906..453856 (+) | 951 | WP_003699627.1 | PilW family protein | Machinery gene |
| OCL46_RS02355 (OCL46_02355) | pilK | 453835..454446 (+) | 612 | WP_033911077.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| OCL46_RS02360 (OCL46_02360) | pilL | 454448..454921 (+) | 474 | WP_172760650.1 | PilX family type IV pilin | Machinery gene |
| OCL46_RS02365 (OCL46_02365) | - | 454991..455299 (-) | 309 | WP_025456177.1 | AzlD family protein | - |
| OCL46_RS02370 (OCL46_02370) | - | 455296..456006 (-) | 711 | Protein_465 | AzlC family ABC transporter permease | - |
| OCL46_RS02375 (OCL46_02375) | dut | 456172..456624 (+) | 453 | WP_003699637.1 | dUTP diphosphatase | - |
| OCL46_RS02380 (OCL46_02380) | dapC | 456700..457887 (+) | 1188 | WP_003699639.1 | succinyldiaminopimelate transaminase | - |
| OCL46_RS02385 (OCL46_02385) | yaaA | 458043..458822 (+) | 780 | WP_003699641.1 | peroxide stress protein YaaA | - |
| OCL46_RS02400 (OCL46_02400) | - | 459352..460545 (+) | 1194 | WP_017146746.1 | phage integrase central domain-containing protein | - |
| OCL46_RS02405 (OCL46_02405) | - | 460901..461170 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| OCL46_RS02410 (OCL46_02410) | - | 461365..462048 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| OCL46_RS11770 | - | 462329..462595 (-) | 267 | Protein_472 | hypothetical protein | - |
| OCL46_RS02420 (OCL46_02420) | - | 462706..462921 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| OCL46_RS02425 (OCL46_02425) | - | 462973..463464 (-) | 492 | WP_033911206.1 | siphovirus Gp157 family protein | - |
| OCL46_RS02430 (OCL46_02430) | - | 463461..463643 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| OCL46_RS02435 (OCL46_02435) | - | 463783..464469 (-) | 687 | WP_010357532.1 | phage replication initiation protein, NGO0469 family | - |
| OCL46_RS02440 (OCL46_02440) | - | 464538..464699 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| OCL46_RS02445 (OCL46_02445) | - | 464696..464971 (-) | 276 | WP_033911205.1 | NGO1622 family putative holin | - |
| OCL46_RS02450 (OCL46_02450) | - | 465124..465456 (-) | 333 | WP_003695500.1 | hypothetical protein | - |
| OCL46_RS02455 (OCL46_02455) | - | 465598..465873 (-) | 276 | WP_229930546.1 | hypothetical protein | - |
| OCL46_RS02460 (OCL46_02460) | - | 465870..466346 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| OCL46_RS02465 (OCL46_02465) | - | 466379..466579 (-) | 201 | WP_003692842.1 | hypothetical protein | - |
| OCL46_RS02470 (OCL46_02470) | - | 466777..467190 (-) | 414 | WP_003687963.1 | hypothetical protein | - |
| OCL46_RS02475 (OCL46_02475) | - | 467187..467648 (-) | 462 | WP_003687965.1 | helix-turn-helix domain-containing protein | - |
| OCL46_RS02480 (OCL46_02480) | - | 467665..468102 (-) | 438 | WP_003687967.1 | hypothetical protein | - |
| OCL46_RS02485 (OCL46_02485) | - | 468215..468931 (-) | 717 | WP_003687969.1 | LexA family transcriptional regulator | - |
| OCL46_RS02490 (OCL46_02490) | - | 469006..469236 (+) | 231 | WP_020997318.1 | Cro/CI family transcriptional regulator | - |
| OCL46_RS02495 (OCL46_02495) | - | 469316..469471 (+) | 156 | WP_003698902.1 | hypothetical protein | - |
| OCL46_RS02500 (OCL46_02500) | - | 469448..469636 (-) | 189 | WP_003691445.1 | hypothetical protein | - |
| OCL46_RS02505 (OCL46_02505) | - | 469809..470036 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| OCL46_RS02510 (OCL46_02510) | - | 470154..471218 (+) | 1065 | WP_003689134.1 | hypothetical protein | - |
| OCL46_RS02515 (OCL46_02515) | - | 471215..472576 (+) | 1362 | WP_003706450.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| OCL46_RS02520 (OCL46_02520) | - | 472593..472844 (+) | 252 | WP_003703849.1 | hypothetical protein | - |
| OCL46_RS02525 (OCL46_02525) | - | 472858..473352 (+) | 495 | WP_047923539.1 | DUF3310 domain-containing protein | - |
| OCL46_RS02530 (OCL46_02530) | - | 473547..473696 (+) | 150 | WP_047920329.1 | phage associated protein | - |
| OCL46_RS02535 (OCL46_02535) | - | 473725..474006 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| OCL46_RS02540 (OCL46_02540) | - | 473997..474434 (+) | 438 | WP_229433529.1 | RusA family crossover junction endodeoxyribonuclease | - |
| OCL46_RS02545 (OCL46_02545) | - | 474427..474732 (+) | 306 | WP_025456182.1 | DUF1364 domain-containing protein | - |
| OCL46_RS02550 (OCL46_02550) | - | 474729..475112 (+) | 384 | WP_003699764.1 | recombination protein NinB | - |
| OCL46_RS02555 (OCL46_02555) | - | 475103..475621 (+) | 519 | WP_003693459.1 | HNH endonuclease | - |
| OCL46_RS02560 (OCL46_02560) | - | 475686..476108 (+) | 423 | WP_003690919.1 | hypothetical protein | - |
| OCL46_RS02565 (OCL46_02565) | - | 476108..476647 (+) | 540 | WP_003693457.1 | hypothetical protein | - |
| OCL46_RS02570 (OCL46_02570) | - | 476628..477902 (+) | 1275 | WP_003698265.1 | PBSX family phage terminase large subunit | - |
| OCL46_RS02575 (OCL46_02575) | - | 477887..480154 (+) | 2268 | WP_229433533.1 | hypothetical protein | - |
| OCL46_RS02580 (OCL46_02580) | - | 480392..481588 (+) | 1197 | WP_003693452.1 | hypothetical protein | - |
| OCL46_RS02585 (OCL46_02585) | - | 481585..488892 (+) | 7308 | WP_003698268.1 | PLxRFG domain-containing protein | - |
| OCL46_RS02590 (OCL46_02590) | - | 489518..490813 (+) | 1296 | WP_003693441.1 | DUF4043 family protein | - |
| OCL46_RS02595 (OCL46_02595) | - | 490871..491344 (+) | 474 | WP_003693439.1 | hypothetical protein | - |
| OCL46_RS02600 (OCL46_02600) | - | 491350..491835 (+) | 486 | WP_003693438.1 | hypothetical protein | - |
| OCL46_RS02605 (OCL46_02605) | - | 491832..492506 (+) | 675 | WP_003693436.1 | hypothetical protein | - |
| OCL46_RS02610 (OCL46_02610) | - | 492509..492658 (+) | 150 | WP_017146863.1 | hypothetical protein | - |
| OCL46_RS02615 (OCL46_02615) | - | 492695..493546 (-) | 852 | WP_003699775.1 | Bro-N domain-containing protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 34788.50 Da Isoelectric Point: 9.1777
>NTDB_id=735567 OCL46_RS02350 WP_003699627.1 452906..453856(+) (pilJ) [Neisseria gonorrhoeae strain 10531]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 951 bp
>NTDB_id=735567 OCL46_RS02350 WP_003699627.1 452906..453856(+) (pilJ) [Neisseria gonorrhoeae strain 10531]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
93.038 |
100 |
0.93 |