Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   P5670_RS06015 Genome accession   NZ_CP121087
Coordinates   1176067..1176696 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ST3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171067..1181696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5670_RS06000 (P5670_06000) helD 1171309..1173363 (-) 2055 WP_001305911.1 DNA helicase IV -
  P5670_RS06005 (P5670_06005) yccF 1173486..1173932 (+) 447 WP_001261235.1 YccF domain-containing protein -
  P5670_RS06010 (P5670_06010) yccS 1173942..1176104 (+) 2163 WP_000875041.1 YccS family putative transporter -
  P5670_RS06015 (P5670_06015) sxy/tfoX 1176067..1176696 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  P5670_RS06020 (P5670_06020) sulA 1176915..1177424 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  P5670_RS06025 (P5670_06025) ompA 1177780..1178820 (+) 1041 WP_001309394.1 porin OmpA -
  P5670_RS06030 (P5670_06030) matP 1178896..1179348 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  P5670_RS06035 (P5670_06035) ycbZ 1179534..1181294 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=735523 P5670_RS06015 WP_000839153.1 1176067..1176696(-) (sxy/tfoX) [Escherichia coli strain ST3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=735523 P5670_RS06015 WP_000839153.1 1176067..1176696(-) (sxy/tfoX) [Escherichia coli strain ST3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1