Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   P5670_RS00525 Genome accession   NZ_CP121087
Coordinates   107505..108932 (-) Length   475 a.a.
NCBI ID   WP_000980626.1    Uniprot ID   -
Organism   Escherichia coli strain ST3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 102505..113932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5670_RS00500 (P5670_00500) hisL 103529..103579 (-) 51 WP_001364200.1 his operon leader peptide -
  P5670_RS00505 (P5670_00505) yeeZ 104006..104830 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  P5670_RS00510 (P5670_00510) yeeY 104876..105805 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  P5670_RS00515 (P5670_00515) yoeI 106020..106082 (+) 63 WP_010723108.1 membrane protein YoeI -
  P5670_RS00520 (P5670_00520) plaP 106072..107430 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  P5670_RS00525 (P5670_00525) sbcB 107505..108932 (-) 1428 WP_000980626.1 exodeoxyribonuclease I Machinery gene
  P5670_RS00530 (P5670_00530) dacD 109141..110307 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  P5670_RS00535 (P5670_00535) sbmC 110426..110899 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  P5670_RS00540 (P5670_00540) yeeA 111098..112156 (+) 1059 WP_001200877.1 FUSC family protein -
  P5670_RS00545 (P5670_00545) tmaR 112328..112657 (+) 330 WP_000450409.1 DUF496 family protein -
  P5670_RS00550 (P5670_00550) - 112758..113201 (-) 444 WP_001189433.1 EutP/PduV family microcompartment system protein -
  P5670_RS00555 (P5670_00555) pduU 113206..113556 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54532.81 Da        Isoelectric Point: 5.4700

>NTDB_id=735511 P5670_RS00525 WP_000980626.1 107505..108932(-) (sbcB) [Escherichia coli strain ST3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=735511 P5670_RS00525 WP_000980626.1 107505..108932(-) (sbcB) [Escherichia coli strain ST3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTTCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCT
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGACGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583