Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   OCL42_RS02350 Genome accession   NZ_CP106807
Coordinates   453178..454146 (+) Length   322 a.a.
NCBI ID   WP_263074907.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10736     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448178..459146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL42_RS02325 (OCL42_02325) - 448682..449191 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OCL42_RS02330 (OCL42_02330) - 449421..450002 (-) 582 WP_003701053.1 superoxide dismutase -
  OCL42_RS02335 (OCL42_02335) dnaB 450165..451571 (+) 1407 WP_241532347.1 replicative DNA helicase -
  OCL42_RS02340 (OCL42_02340) pilH 451879..452544 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL42_RS02345 (OCL42_02345) pilI 452573..453181 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Machinery gene
  OCL42_RS02350 (OCL42_02350) pilJ 453178..454146 (+) 969 WP_263074907.1 PilW family protein Machinery gene
  OCL42_RS02355 (OCL42_02355) pilK 454125..454733 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL42_RS02360 (OCL42_02360) pilL 454735..455208 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL42_RS02365 (OCL42_02365) - 455820..456265 (-) 446 Protein_463 AzlC family ABC transporter permease -
  OCL42_RS02370 (OCL42_02370) dut 456431..456883 (+) 453 WP_260236890.1 dUTP diphosphatase -
  OCL42_RS02375 (OCL42_02375) dapC 456961..458148 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35380.32 Da        Isoelectric Point: 9.1851

>NTDB_id=735469 OCL42_RS02350 WP_263074907.1 453178..454146(+) (pilJ) [Neisseria gonorrhoeae strain 10736]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNVATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNPAKPGAKQENPLFSLKRSGMDKQLIPVAESTDIKYPGFTQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVRYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIATSSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=735469 OCL42_RS02350 WP_263074907.1 453178..454146(+) (pilJ) [Neisseria gonorrhoeae strain 10736]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGTGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCCTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCACTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

78.154

100

0.789