Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCL42_RS00275 Genome accession   NZ_CP106807
Coordinates   52450..55593 (-) Length   1047 a.a.
NCBI ID   WP_263074903.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10736     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47450..60593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL42_RS00250 (OCL42_00250) - 47646..48209 (-) 564 WP_002214615.1 ComF family protein -
  OCL42_RS00255 (OCL42_00255) - 48830..49219 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  OCL42_RS00265 (OCL42_00265) - 49382..49761 (-) 380 Protein_48 VOC family protein -
  OCL42_RS00270 (OCL42_00270) carA 49815..50948 (-) 1134 WP_260236847.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  OCL42_RS00275 (OCL42_00275) pilC 52450..55593 (-) 3144 WP_263074903.1 PilC family type IV pilus tip adhesin Machinery gene
  OCL42_RS00280 (OCL42_00280) apbC 57404..58483 (-) 1080 WP_260236848.1 iron-sulfur cluster carrier protein ApbC -
  OCL42_RS00290 (OCL42_00290) - 58857..59366 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  OCL42_RS00295 (OCL42_00295) nadR 59707..60147 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1047 a.a.        Molecular weight: 115559.94 Da        Isoelectric Point: 9.9847

>NTDB_id=735455 OCL42_RS00275 WP_263074903.1 52450..55593(-) (pilC) [Neisseria gonorrhoeae strain 10736]
MNKTLKRQVFRHTALYAAILMFSHTGGAMAQTRNYAIVMNKRNQPEVKWDGQYQKSQLREKDGERKFIYTNQKNWSGQQN
NFISFDNTDTLVSRQSGTAVFGTATYLPPYGKVSGFDADALKERNNAVDWIRTTRAGLAGYVYTGIHCGSTSGCPELVYK
TRFSFGNTGLATNAGKLNRHTEPSRENSPIYKLKDHPWLGVSFNLGSEGTAKDGRSSNKLVSSFDENNSNSNQNLVYTTE
GHRISLGDWQRESTAMAYYLNAKLHLLDKKKIENIAPGKTVQLGVLKPSIDVRTRNTGFGLLNFWATWKIEDKGNITVRL
GLPEVKAGRCTNAAHPNLKAKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDPARPGRHSLA
ALDTQNIKSREPNFNSRQTVIRLPGGVYKINPGKNGGRVAGINGNDGKNDTFGIFKDRYVTPETDEWSNILLPWTARYYG
NDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVDGYLATSANDGMVHIFKKTGTDERSYNL
KLSYIPGTMPRKDIESKDSTLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYALDLSKI
DSSNLTGVSMFDVQNDKNNNKNDNNRVKLGYTVGTPQIGKIRNGKYAAFLASGYAAKQIASQENKTALYVYDLNDTLGTP
IAKIEVEDGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDNDPNKWTVRTIFQGTKPITSAPAVSRLKDKRVVI
FGTGSDLTEDDVLNTDEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRV
TVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDNQVAQYSGHQKMNGKSVPIGCMWKNGKT
VCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRL
SWREVFF

Nucleotide


Download         Length: 3144 bp        

>NTDB_id=735455 OCL42_RS00275 WP_263074903.1 52450..55593(-) (pilC) [Neisseria gonorrhoeae strain 10736]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGCGATGGCGCAAACCCGTAACTACGCTATTGTCATGAACAAACGAAATCAGCCGGAGGTAAAGTGGGATGGGCAATATC
AAAAATCACAATTAAGGGAAAAAGACGGGGAACGCAAATTTATCTATACGAACCAGAAAAACTGGTCGGGCCAACAAAAC
AATTTTATCTCATTCGACAATACCGATACCCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCT
GCCGCCCTACGGCAAGGTTTCCGGTTTTGATGCCGACGCTCTGAAAGAGCGCAACAATGCCGTCGATTGGATTCGTACCA
CCCGGGCCGGGCTGGCAGGCTACGTCTACACCGGTATCCATTGCGGAAGTACCTCAGGCTGTCCCGAACTTGTCTATAAA
ACCCGATTTTCCTTCGGCAACACCGGTTTGGCAACAAATGCGGGCAAGCTGAATAGGCACACAGAGCCAAGCCGCGAAAA
TTCGCCCATTTACAAATTGAAAGATCATCCATGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGGGTACCGCCAAAGATG
GCAGATCATCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACGACAGAA
GGCCACCGTATTTCCCTTGGCGACTGGCAGCGCGAATCTACCGCCATGGCCTATTATCTGAACGCCAAACTGCACCTGCT
GGATAAAAAAAAGATTGAAAATATCGCGCCAGGCAAAACAGTGCAGTTGGGTGTCTTGAAGCCGAGCATCGATGTGCGGA
CAAGAAATACGGGGTTCGGCTTGCTAAATTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTC
GGCCTGCCGGAAGTCAAAGCCGGGCGCTGCACCAACGCCGCCCACCCCAATCTCAAGGCCAAAGCCCCTTCGCCGGCCCT
GACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCG
GCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACCCCGCCCGGCCCGGCCGGCATTCCCTCGCC
GCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGGCGGCGT
GTACAAGATCAACCCGGGCAAGAACGGCGGCCGGGTCGCGGGTATTAATGGCAATGACGGCAAAAACGACACTTTCGGCA
TCTTCAAGGACAGGTATGTCACACCTGAGACCGACGAGTGGAGCAACATACTGCTGCCTTGGACGGCCCGGTATTACGGT
AATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCG
CATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGACG
GGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACGGATGAACGCAGCTACAATCTG
AAGCTCAGCTACATCCCCGGTACGATGCCGCGCAAGGATATTGAAAGCAAAGATTCTACACTCGCCAAAGAGCTGCGCAC
CTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAAG
ACAAGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTTGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATC
GACAGCAGCAACCTGACCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAATGACAATAATCGCGT
GAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAATCCGCAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTT
ATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTATATGATTTGAACGACACCTTAGGTACGCCG
ATTGCAAAAATCGAAGTGGAGGACGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGT
CGATATCGCCTATGCCGGCGATCGGGGCGGGAATATGTACCGCTTTGATTTGAGCGACAACGACCCGAACAAATGGACTG
TACGCACTATTTTCCAAGGCACAAAACCGATTACTTCCGCGCCCGCCGTTTCCCGACTGAAAGACAAACGCGTCGTCATC
TTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTGAATACGGACGAACAATATATTTACGGCATCTTCGACGACGA
TAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAAATA
AAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTT
ACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAGCTATACGGGTAATGACAAATGTGGCGCGCA
AACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATAACC
AGGTTGCGCAATATTCCGGCCATCAGAAAATGAACGGCAAGTCCGTCCCCATAGGCTGCATGTGGAAAAACGGCAAAACC
GTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGT
CACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCG
GAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTA
AGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(535-859)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

71.766

100

0.726