Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OCL39_RS07810 Genome accession   NZ_CP106805
Coordinates   1502697..1503296 (+) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae strain 10743     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497697..1508296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL39_RS07795 (OCL39_07795) yihA 1498281..1498910 (+) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  OCL39_RS07800 (OCL39_07800) - 1499031..1501427 (-) 2397 WP_003687357.1 penicillin-binding protein 1A -
  OCL39_RS07805 (OCL39_07805) pilM 1501579..1502694 (+) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  OCL39_RS07810 (OCL39_07810) pilN 1502697..1503296 (+) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  OCL39_RS07815 (OCL39_07815) - 1503297..1503944 (+) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  OCL39_RS07820 (OCL39_07820) pilP 1503962..1504507 (+) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  OCL39_RS07825 (OCL39_07825) pilQ 1504526..1506721 (+) 2196 WP_050302183.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=735433 OCL39_RS07810 WP_003687354.1 1502697..1503296(+) (pilN) [Neisseria gonorrhoeae strain 10743]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=735433 OCL39_RS07810 WP_003687354.1 1502697..1503296(+) (pilN) [Neisseria gonorrhoeae strain 10743]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975