Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | OCL39_RS03885 | Genome accession | NZ_CP106805 |
| Coordinates | 767897..769642 (+) | Length | 581 a.a. |
| NCBI ID | WP_003691195.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10743 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 732720..808197 | 767897..769642 | within | 0 |
| IS/Tn | 770329..771330 | 767897..769642 | flank | 687 |
Gene organization within MGE regions
Location: 732720..808197
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCL39_RS03710 (OCL39_03710) | - | 732720..733790 (-) | 1071 | WP_003691208.1 | integrase arm-type DNA-binding domain-containing protein | - |
| OCL39_RS03715 (OCL39_03715) | - | 733999..734778 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| OCL39_RS03720 (OCL39_03720) | - | 735370..735579 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| OCL39_RS03725 (OCL39_03725) | dinB | 735678..736736 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| OCL39_RS03730 (OCL39_03730) | rep | 736806..738821 (-) | 2016 | WP_003706226.1 | DNA helicase Rep | - |
| OCL39_RS03735 (OCL39_03735) | aroD | 738841..739605 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| OCL39_RS03740 (OCL39_03740) | recA | 739805..740851 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| OCL39_RS03745 (OCL39_03745) | - | 741504..741839 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| OCL39_RS03750 (OCL39_03750) | dnaX | 741920..744043 (-) | 2124 | WP_003702741.1 | DNA polymerase III subunit gamma/tau | - |
| OCL39_RS03755 (OCL39_03755) | mutL | 744138..746114 (-) | 1977 | WP_003688688.1 | DNA mismatch repair endonuclease MutL | - |
| OCL39_RS03760 (OCL39_03760) | - | 746258..746443 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| OCL39_RS03765 (OCL39_03765) | - | 746454..747122 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| OCL39_RS03770 (OCL39_03770) | - | 747122..747835 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| OCL39_RS03775 (OCL39_03775) | purE | 747883..748368 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| OCL39_RS03780 (OCL39_03780) | - | 748580..749437 (-) | 858 | Protein_720 | transposase | - |
| OCL39_RS03785 (OCL39_03785) | - | 749754..750119 (+) | 366 | Protein_721 | transposase | - |
| OCL39_RS12080 | - | 750126..751151 (+) | 1026 | Protein_722 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| OCL39_RS03800 (OCL39_03800) | - | 751346..752002 (-) | 657 | WP_003693075.1 | response regulator transcription factor | - |
| OCL39_RS03805 (OCL39_03805) | - | 751999..753768 (-) | 1770 | WP_003699959.1 | histidine kinase | - |
| OCL39_RS03810 (OCL39_03810) | - | 753975..754589 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| OCL39_RS03815 (OCL39_03815) | - | 754752..755369 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| OCL39_RS03820 (OCL39_03820) | - | 755377..756240 (+) | 864 | WP_003688678.1 | ATP-binding protein | - |
| OCL39_RS03825 (OCL39_03825) | - | 756253..756687 (-) | 435 | WP_260236943.1 | Spy/CpxP family protein refolding chaperone | - |
| OCL39_RS03830 (OCL39_03830) | rpe | 756833..757516 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| OCL39_RS03835 (OCL39_03835) | ruvB | 757761..758792 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| OCL39_RS03840 (OCL39_03840) | - | 758874..759182 (-) | 309 | WP_002232489.1 | hypothetical protein | - |
| OCL39_RS03845 (OCL39_03845) | - | 759601..760833 (-) | 1233 | WP_003704019.1 | multifunctional CCA addition/repair protein | - |
| OCL39_RS03850 (OCL39_03850) | - | 760912..762540 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| OCL39_RS03855 (OCL39_03855) | - | 762690..763064 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| OCL39_RS03860 (OCL39_03860) | - | 763113..764651 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| OCL39_RS03865 (OCL39_03865) | recR | 764718..765335 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| OCL39_RS03870 (OCL39_03870) | - | 765391..765669 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| OCL39_RS03875 (OCL39_03875) | - | 765895..767142 (+) | 1248 | WP_003693086.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| OCL39_RS03880 (OCL39_03880) | lolD | 767135..767830 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| OCL39_RS03885 (OCL39_03885) | recD | 767897..769642 (+) | 1746 | WP_003691195.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| OCL39_RS03890 (OCL39_03890) | - | 769714..770360 (-) | 647 | Protein_741 | methyltransferase | - |
| OCL39_RS03895 (OCL39_03895) | - | 770368..771330 (+) | 963 | WP_260237129.1 | IS110 family transposase | - |
| OCL39_RS03900 (OCL39_03900) | - | 771458..771917 (-) | 460 | Protein_743 | methyltransferase | - |
| OCL39_RS03905 (OCL39_03905) | - | 771806..772069 (-) | 264 | WP_260236942.1 | hypothetical protein | - |
| OCL39_RS03910 (OCL39_03910) | lon | 772169..774631 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| OCL39_RS03915 (OCL39_03915) | - | 774813..775082 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| OCL39_RS03920 (OCL39_03920) | - | 775258..775692 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| OCL39_RS03925 (OCL39_03925) | - | 775685..776992 (-) | 1308 | WP_003702721.1 | homoserine dehydrogenase | - |
| OCL39_RS03930 (OCL39_03930) | - | 777188..777559 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| OCL39_RS03935 (OCL39_03935) | - | 777636..779558 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| OCL39_RS03940 (OCL39_03940) | - | 779545..779940 (+) | 396 | WP_025456251.1 | hypothetical protein | - |
| OCL39_RS03945 (OCL39_03945) | - | 780031..780543 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| OCL39_RS03950 (OCL39_03950) | - | 780988..781683 (-) | 696 | WP_057321604.1 | DUF4400 domain-containing protein | - |
| OCL39_RS03955 (OCL39_03955) | traD | 781673..783715 (-) | 2043 | WP_003693097.1 | type IV conjugative transfer system coupling protein TraD | - |
| OCL39_RS03960 (OCL39_03960) | mobH | 783712..786264 (-) | 2553 | WP_260236941.1 | MobH family relaxase | - |
| OCL39_RS03965 (OCL39_03965) | - | 786261..786680 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| OCL39_RS03970 (OCL39_03970) | - | 787190..787651 (+) | 462 | WP_134921309.1 | lytic transglycosylase domain-containing protein | - |
| OCL39_RS03975 (OCL39_03975) | - | 787621..788142 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| OCL39_RS03980 (OCL39_03980) | traA | 788198..788494 (+) | 297 | WP_260236940.1 | TraA family conjugative transfer protein | - |
| OCL39_RS03985 (OCL39_03985) | traL | 788516..788797 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| OCL39_RS03990 (OCL39_03990) | - | 788794..789459 (+) | 666 | WP_229691871.1 | type IV conjugative transfer system protein TraE | - |
| OCL39_RS03995 (OCL39_03995) | - | 789461..790195 (+) | 735 | WP_260236939.1 | type-F conjugative transfer system secretin TraK | - |
| OCL39_RS04000 (OCL39_04000) | - | 790197..791510 (+) | 1314 | WP_003693116.1 | TrbI/VirB10 family protein | - |
| OCL39_RS04005 (OCL39_04005) | - | 791520..792239 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| OCL39_RS04010 (OCL39_04010) | - | 792236..792817 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| OCL39_RS04015 (OCL39_04015) | traC | 792827..795403 (+) | 2577 | WP_263055864.1 | type IV secretion system protein TraC | - |
| OCL39_RS04020 (OCL39_04020) | - | 795431..795979 (+) | 549 | WP_003693124.1 | hypothetical protein | - |
| OCL39_RS04025 (OCL39_04025) | - | 795979..796524 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| OCL39_RS04030 (OCL39_04030) | - | 796533..797189 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| OCL39_RS04035 (OCL39_04035) | - | 797186..798304 (+) | 1119 | WP_260236938.1 | TraU family protein | - |
| OCL39_RS04040 (OCL39_04040) | trbC | 798319..799071 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| OCL39_RS04045 (OCL39_04045) | - | 799068..800312 (+) | 1245 | WP_003693135.1 | hypothetical protein | - |
| OCL39_RS04050 (OCL39_04050) | traN | 800351..801892 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| OCL39_RS04055 (OCL39_04055) | - | 801879..802304 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| OCL39_RS04060 (OCL39_04060) | - | 802316..803092 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| OCL39_RS04065 (OCL39_04065) | - | 803264..804775 (+) | 1512 | WP_057321601.1 | conjugal transfer protein TraH | - |
| OCL39_RS04070 (OCL39_04070) | - | 804782..807691 (+) | 2910 | WP_260236937.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| OCL39_RS04075 (OCL39_04075) | - | 807754..808197 (+) | 444 | WP_260236936.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63097.87 Da Isoelectric Point: 5.8825
>NTDB_id=735417 OCL39_RS03885 WP_003691195.1 767897..769642(+) (recD) [Neisseria gonorrhoeae strain 10743]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=735417 OCL39_RS03885 WP_003691195.1 767897..769642(+) (recD) [Neisseria gonorrhoeae strain 10743]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.656 |
100 |
0.997 |