Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P6F23_RS00265 Genome accession   NZ_CP120953
Coordinates   32504..33265 (+) Length   253 a.a.
NCBI ID   WP_001266275.1    Uniprot ID   Q8E2G8
Organism   Streptococcus agalactiae strain GBSIR0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27504..38265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6F23_RS00250 (P6F23_00250) - 28796..30139 (+) 1344 WP_000746078.1 peptidoglycan hydrolase PcsB -
  P6F23_RS00255 (P6F23_00255) - 30263..31231 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  P6F23_RS00260 (P6F23_00260) - 31339..32514 (+) 1176 WP_000171453.1 pyridoxal phosphate-dependent aminotransferase -
  P6F23_RS00265 (P6F23_00265) recO 32504..33265 (+) 762 WP_001266275.1 DNA repair protein RecO Machinery gene
  P6F23_RS00270 (P6F23_00270) - 33328..34206 (+) 879 WP_000420128.1 type II CAAX endopeptidase family protein -
  P6F23_RS00275 (P6F23_00275) plsX 34284..35276 (+) 993 WP_000716823.1 phosphate acyltransferase PlsX -
  P6F23_RS00280 (P6F23_00280) - 35287..35526 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  P6F23_RS00285 (P6F23_00285) purC 35650..36354 (+) 705 WP_000184494.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29684.10 Da        Isoelectric Point: 6.2989

>NTDB_id=735404 P6F23_RS00265 WP_001266275.1 32504..33265(+) (recO) [Streptococcus agalactiae strain GBSIR0001]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRVGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=735404 P6F23_RS00265 WP_001266275.1 32504..33265(+) (recO) [Streptococcus agalactiae strain GBSIR0001]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACCAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGTAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E2G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628