Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P7249_RS20890 Genome accession   NZ_CP120944
Coordinates   4103884..4104489 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157:H7 str. EDL933     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4098884..4109489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7249_RS20870 aes 4099025..4099984 (+) 960 WP_000801803.1 acetyl esterase -
  P7249_RS20875 hemH 4099981..4100943 (-) 963 WP_001250105.1 ferrochelatase -
  P7249_RS20880 adk 4101075..4101719 (-) 645 WP_001220233.1 adenylate kinase -
  P7249_RS20885 htpG 4101900..4103774 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  P7249_RS20890 recR 4103884..4104489 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  P7249_RS20895 ybaB 4104489..4104818 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  P7249_RS20900 dnaX 4104871..4106802 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  P7249_RS20905 apt 4106931..4107482 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  P7249_RS20910 ybaN 4107635..4108012 (-) 378 WP_001188905.1 DUF454 family protein -
  P7249_RS20915 priC 4108082..4108609 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  P7249_RS20920 rsmS 4108623..4108787 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=735377 P7249_RS20890 WP_001195025.1 4103884..4104489(-) (recR) [Escherichia coli O157:H7 str. EDL933]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=735377 P7249_RS20890 WP_001195025.1 4103884..4104489(-) (recR) [Escherichia coli O157:H7 str. EDL933]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443