Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE37_RS03345 Genome accession   NZ_CP106789
Coordinates   620123..623248 (-) Length   1041 a.a.
NCBI ID   WP_260240060.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 615123..628248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE37_RS03320 (LLE37_03320) - 615258..615791 (-) 534 WP_003692498.1 hypothetical protein -
  LLE37_RS03325 (LLE37_03325) - 616512..616901 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  LLE37_RS03335 (LLE37_03335) - 617064..617443 (-) 380 Protein_636 VOC family protein -
  LLE37_RS03340 (LLE37_03340) carA 617497..618630 (-) 1134 WP_003699436.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  LLE37_RS03345 (LLE37_03345) pilC 620123..623248 (-) 3126 WP_260240060.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE37_RS03350 (LLE37_03350) apbC 625253..626332 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  LLE37_RS03360 (LLE37_03360) - 626706..627215 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  LLE37_RS03365 (LLE37_03365) nadR 627556..627996 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1041 a.a.        Molecular weight: 113980.59 Da        Isoelectric Point: 9.9592

>NTDB_id=735169 LLE37_RS03345 WP_260240060.1 620123..623248(-) (pilC) [Neisseria gonorrhoeae strain 10638]
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAETREYAIIMNGRNQPEVQWSVPSSIKYKDRKRKYTHYKYPQGGSSVSF
NNSDELVSQQSGTAVFGTATYLPPYGKVSGFDTDSLKGRANAVDWIRTTRIALAGYSYAGVVCNSTTGCPKLVYKTRFSF
DNPDLAKTGSRLNRHTEPSRDNSPIYKLKDYPWLGVSFNLGAEGTAKDGKVTNKLVSSFDENNSNSNQNLVYTTEGHNIS
LGNWQRESTAMAYYLNAKLHLLDKKKIKDITSKTVRLGVLKPSIDVRKGNTGLSGILSFWATWDIKDTGQIPVKLGLPQV
KAGRCINKPNPNPKSALSPALTAPALWFGPAQNGKVQMYSASVSTYPGSSSSRIFLQELKTKTDPGRPGRHSLAALNERD
IKSREPNFNSRQTVIRLPGGVYRIAPGNSGRVAGFNDNDGKNDTFGIYKDRLVIPEPDEWSEVLLPWTARYYGNDDIFKT
FNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATAANDGMVHLFKRNGTDQRGYELKLSYIPG
TMPRQYFDNDTSALKDSTLAQELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAYALDLTKIDN
SNLTGVSMFDVKNESKNNGVKLGYTVGTPQIGKIRNGKYAAFLASGYAAKDIVSSDNTTALYVYDLGNGGGSLIKKIEAP
GGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSGDNPSKWTVRTIFQGTKPITSAPAVSRLADKRVVIFGTGSDL
SEQDVVDKDQQYIYGIFDDDKGTVKVTVQNGTGGGLLEQVLKEENKTLFLNKGSDGSGSKGWVVKLKEGQRVTVKPTVVL
RTAFVTIRKYKDDGCGADTAILGINTADGGALTPRSARPIVPEANKDVAQYSGHKTTSKGKSIPIGCMEKGGKTVCPNGY
VYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREVF
F

Nucleotide


Download         Length: 3126 bp        

>NTDB_id=735169 LLE37_RS03345 WP_260240060.1 620123..623248(-) (pilC) [Neisseria gonorrhoeae strain 10638]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGGAAACCCGTGAATACGCTATTATCATGAACGGGCGAAACCAGCCCGAGGTACAGTGGAGTGTGC
CATCTTCAATAAAGTACAAAGACAGGAAGCGCAAATATACTCATTATAAGTACCCACAAGGAGGAAGCTCTGTCTCATTC
AACAATAGCGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAA
GGTTTCCGGTTTTGATACCGATAGTCTGAAAGGGCGCGCCAATGCCGTTGATTGGATTCGTACCACCCGCATCGCGCTGG
CAGGCTACAGCTACGCCGGTGTCGTATGCAACAGCACCACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTTCCTTC
GATAATCCCGACTTGGCAAAAACAGGAAGCAGGCTGAATAGGCACACAGAGCCAAGCCGCGACAATTCGCCCATTTACAA
ATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGCCAAAGATGGTAAGGTAACCAACA
AATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACCACGGAAGGCCACAATATTTCC
TTGGGCAACTGGCAGCGCGAAAGTACCGCCATGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAAAGAT
TAAAGATATCACCAGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGCGGAAAGGAAATACGGGGCTTA
GCGGCATTCTATCTTTTTGGGCTACGTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTCGGCCTGCCGCAAGTC
AAAGCCGGGCGCTGCATCAACAAACCGAACCCCAATCCCAAATCAGCCCTTTCGCCGGCACTGACCGCCCCCGCGCTGTG
GTTCGGCCCTGCGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGGCAGTTCGAGCAGCCGCA
TCTTCCTCCAAGAGCTGAAAACTAAAACCGACCCCGGCAGGCCCGGCCGGCATTCCCTCGCCGCTTTGAATGAACGAGAT
ATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTCATCCGATTGCCGGGCGGCGTGTACCGGATCGCCCCGGG
CAATAGCGGCCGGGTCGCGGGTTTTAATGACAATGACGGCAAAAACGACACTTTCGGCATCTACAAGGACAGGCTCGTCA
TACCTGAGCCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACGGCCCGGTATTACGGTAATGACGATATATTTAAAACA
TTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCGCATCCGCACAAAAGAAGATGA
CAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGTATCTGGCAACCGCCGCGA
ACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTACGAACTGAAGCTCAGCTACATCCCCGGC
ACGATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCAAAGACTCCACCCTCGCCCAAGAGCTGCGCACCTTTGC
CGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAGGACAGGC
AAAAACATTTCTTTATGTTTGGTGCGATGGGCCTTGGCGGCAGAGGCGCATACGCCTTGGATTTGACCAAAATCGACAAC
AGCAACCTGACCGGCGTTTCCATGTTTGATGTCAAAAACGAGAGTAAAAATAATGGCGTGAAATTAGGCTACACCGTCGG
TACGCCGCAAATCGGCAAAATCCGCAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAAGATATTGTCA
GCAGCGATAATACAACCGCGCTGTATGTGTATGATTTGGGAAACGGCGGTGGTAGTCTGATTAAAAAAATCGAAGCACCC
GGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGA
CCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGGCGACAATCCGTCCAAATGGACTGTACGCACTATTTTCCAAGGCA
CAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTCATCTTCGGTACGGGCAGCGATTTG
AGTGAACAGGATGTAGTCGATAAGGATCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGTTAAGGTAAC
GGTACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAGTGCTTAAAGAGGAAAATAAAACATTATTCCTGAACAAGGGAT
CCGACGGATCGGGCAGTAAGGGGTGGGTAGTGAAGCTGAAGGAAGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTG
CGTACCGCCTTCGTAACCATCCGCAAGTATAAAGACGACGGCTGCGGCGCGGATACCGCCATTTTGGGCATCAATACCGC
CGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGAAGCCAATAAGGATGTCGCACAATATTCCGGCC
ATAAGACAACCTCCAAAGGCAAATCCATCCCTATAGGTTGTATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGATAT
GTTTACGACAAGCCGGTTAATGTGCGTTATCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGC
AGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCC
TGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTC
TTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(514-850)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.697

100

0.707