Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   LLNCDO1820_RS00505 Genome accession   NZ_CP120927
Coordinates   89906..90124 (+) Length   72 a.a.
NCBI ID   WP_010905100.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain NCDO1820     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 84906..95124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO1820_RS00475 (LLNCDO1820_00475) - 85893..86018 (+) 126 WP_021214955.1 lactococcin family bacteriocin -
  LLNCDO1820_RS00480 (LLNCDO1820_00480) - 86344..86712 (+) 369 WP_223848592.1 transporter -
  LLNCDO1820_RS00485 (LLNCDO1820_00485) - 86751..87407 (+) 657 WP_021214956.1 CPBP family intramembrane glutamic endopeptidase -
  LLNCDO1820_RS00490 (LLNCDO1820_00490) - 87510..87791 (-) 282 WP_010905098.1 hypothetical protein -
  LLNCDO1820_RS00495 (LLNCDO1820_00495) - 87801..87953 (-) 153 WP_010905099.1 hypothetical protein -
  LLNCDO1820_RS00500 (LLNCDO1820_00500) - 88339..89658 (+) 1320 WP_011834695.1 IS4-like element IS1675 family transposase -
  LLNCDO1820_RS00505 (LLNCDO1820_00505) comB/nlmE 89906..90124 (+) 219 WP_010905100.1 hypothetical protein Regulator
  LLNCDO1820_RS00510 (LLNCDO1820_00510) - 90218..90355 (+) 138 WP_021214958.1 lactococcin family bacteriocin -
  LLNCDO1820_RS00515 (LLNCDO1820_00515) - 90400..91080 (+) 681 WP_228762925.1 CPBP family intramembrane glutamic endopeptidase -
  LLNCDO1820_RS00520 (LLNCDO1820_00520) - 91506..91958 (+) 453 WP_010905102.1 transporter -
  LLNCDO1820_RS00525 (LLNCDO1820_00525) - 92169..92831 (-) 663 WP_021214959.1 CPBP family intramembrane glutamic endopeptidase -
  LLNCDO1820_RS00535 (LLNCDO1820_00535) - 94279..94647 (+) 369 WP_010905106.1 hypothetical protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8231.78 Da        Isoelectric Point: 10.5176

>NTDB_id=735152 LLNCDO1820_RS00505 WP_010905100.1 89906..90124(+) (comB/nlmE) [Lactococcus lactis subsp. lactis strain NCDO1820]
MKLTGIFLLFLIFKSFPTIFKEENAYKVSATTAINAKDLPNIRYGLQGKTVTIIGKKTYFNYFLDKIMGRTS

Nucleotide


Download         Length: 219 bp        

>NTDB_id=735152 LLNCDO1820_RS00505 WP_010905100.1 89906..90124(+) (comB/nlmE) [Lactococcus lactis subsp. lactis strain NCDO1820]
ATGAAATTGACGGGTATATTTCTTTTATTTTTAATTTTTAAATCTTTTCCTACTATCTTTAAAGAGGAAAATGCTTATAA
AGTTTCTGCGACAACCGCTATCAATGCAAAAGACCTCCCAAATATAAGGTATGGCTTGCAAGGAAAAACGGTGACCATTA
TTGGAAAGAAAACTTATTTCAATTACTTTTTAGATAAAATTATGGGGAGGACTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

46.429

77.778

0.361