Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N9L84_RS08680 Genome accession   NZ_CP106785
Coordinates   1865913..1866548 (+) Length   211 a.a.
NCBI ID   WP_173173797.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain G5.110     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1860913..1871548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9L84_RS08660 (N9L84_08660) lolD 1860935..1861618 (+) 684 WP_263154424.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  N9L84_RS08665 (N9L84_08665) - 1861620..1862864 (+) 1245 WP_263153354.1 lipoprotein-releasing ABC transporter permease subunit -
  N9L84_RS08670 (N9L84_08670) - 1862935..1863465 (-) 531 WP_263153355.1 DUF2062 domain-containing protein -
  N9L84_RS08675 (N9L84_08675) - 1863616..1865840 (+) 2225 Protein_1713 DNA internalization-related competence protein ComEC/Rec2 -
  N9L84_RS08680 (N9L84_08680) exbB 1865913..1866548 (+) 636 WP_173173797.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N9L84_RS08685 (N9L84_08685) - 1866545..1866988 (+) 444 WP_173173799.1 biopolymer transporter ExbD -
  N9L84_RS08690 (N9L84_08690) lpxK 1866988..1867992 (+) 1005 WP_263153357.1 tetraacyldisaccharide 4'-kinase -
  N9L84_RS08695 (N9L84_08695) - 1868034..1868219 (+) 186 WP_263153358.1 Trm112 family protein -
  N9L84_RS08700 (N9L84_08700) kdsB 1868219..1868983 (+) 765 WP_263153360.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N9L84_RS08705 (N9L84_08705) - 1868983..1869441 (+) 459 WP_173173805.1 low molecular weight protein-tyrosine-phosphatase -
  N9L84_RS08710 (N9L84_08710) murB 1869438..1870457 (+) 1020 WP_263153361.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22976.18 Da        Isoelectric Point: 6.7295

>NTDB_id=735113 N9L84_RS08680 WP_173173797.1 1865913..1866548(+) (exbB) [Pseudomonas tohonis strain G5.110]
MWELVKAGGWMMLPIILSSIAATAIIVERLWTLRANRIAPPQLLGQVWRMVKDKQLNAQKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFSGFMDNGMANAPALAGGIGKALITTAA
GLMVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVTQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=735113 N9L84_RS08680 WP_173173797.1 1865913..1866548(+) (exbB) [Pseudomonas tohonis strain G5.110]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCTATCATTCTGAGTTCCATCGCAGCCACCGCCATCATTGT
GGAGCGCCTGTGGACGCTCCGTGCCAATCGCATCGCACCGCCGCAATTGCTCGGCCAGGTGTGGCGCATGGTCAAGGACA
AGCAGCTCAACGCGCAGAAGCTCAAGGAACTGCGTGCATCGTCCCCGCTGGGCGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCATCCCGCGTCATCCATGAGCTGGAGCGCTACCT
CAATACCCTGGGCACCATCGCCGCCATGGGCCCGCTGCTGGGCCTTTTGGGTACCGTGTTCGGGATGATTGAGATCTTCA
GCGGCTTCATGGACAACGGCATGGCAAACGCCCCGGCCCTGGCCGGCGGTATCGGCAAGGCGCTGATCACCACCGCGGCG
GGCCTGATGGTCGCCATCCCCGCCGTGTTCTTCCACCGTTTCCTGCTGCGTCGTGTCGACGAGCTGGTGGTGGCCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGACCCAGGGCGATCGTGAAGTGGACTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.609

98.104

0.81