Detailed information NTG0735065

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4G46_RS07615
• Genome accession: NZ_CP120883
• Coordinates: 1566188..1567192 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NY11384
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1561188..1572192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4G46_RS07585 (P4G46_07600)	fghA	1561280..1562131 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
P4G46_RS07590 (P4G46_07605)	ispF	1562202..1562675 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4G46_RS07595 (P4G46_07610)	truD	1562672..1563739 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
P4G46_RS07600 (P4G46_07615)	surE	1563727..1564476 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4G46_RS07605 (P4G46_07620)	-	1564509..1565144 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4G46_RS07610 (P4G46_07625)	-	1565190..1566083 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4G46_RS07615 (P4G46_07630)	rpoS	1566188..1567192 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P4G46_RS07620 (P4G46_07635)	fdxA	1567619..1567942 (-)	324	WP_003119354.1	ferredoxin FdxA	-
P4G46_RS07625 (P4G46_07640)	mutS	1568009..1570576 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
P4G46_RS07630 (P4G46_07645)	-	1570702..1571709 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=735065 P4G46_RS07615 WP_003113871.1 1566188..1567192(+) (rpoS) [Pseudomonas aeruginosa strain NY11384]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=735065 P4G46_RS07615 WP_003113871.1 1566188..1567192(+) (rpoS) [Pseudomonas aeruginosa strain NY11384]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653