Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | LLE29_RS04015 | Genome accession | NZ_CP106780 |
| Coordinates | 771116..772861 (+) | Length | 581 a.a. |
| NCBI ID | WP_003693088.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10794 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 735966..811419 | 771116..772861 | within | 0 |
| IS/Tn | 773548..774549 | 771116..772861 | flank | 687 |
Gene organization within MGE regions
Location: 735966..811419
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLE29_RS03845 (LLE29_03845) | - | 735966..737036 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| LLE29_RS03850 (LLE29_03850) | - | 737245..738024 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| LLE29_RS03855 (LLE29_03855) | - | 738615..738824 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| LLE29_RS03860 (LLE29_03860) | dinB | 738923..739981 (+) | 1059 | WP_003688698.1 | DNA polymerase IV | - |
| LLE29_RS03865 (LLE29_03865) | rep | 740051..742066 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| LLE29_RS03870 (LLE29_03870) | aroD | 742086..742850 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| LLE29_RS03875 (LLE29_03875) | recA | 743050..744096 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| LLE29_RS03880 (LLE29_03880) | - | 744749..745084 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LLE29_RS03885 (LLE29_03885) | dnaX | 745165..747288 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| LLE29_RS03890 (LLE29_03890) | mutL | 747383..749347 (-) | 1965 | WP_260240070.1 | DNA mismatch repair endonuclease MutL | - |
| LLE29_RS03895 (LLE29_03895) | - | 749491..749676 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| LLE29_RS03900 (LLE29_03900) | - | 749687..750355 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| LLE29_RS03905 (LLE29_03905) | - | 750355..751068 (+) | 714 | WP_003693072.1 | tol-pal system YbgF family protein | - |
| LLE29_RS03910 (LLE29_03910) | purE | 751116..751601 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| LLE29_RS03915 (LLE29_03915) | - | 751813..752609 (-) | 797 | Protein_763 | transposase | - |
| LLE29_RS03920 (LLE29_03920) | - | 752974..753339 (+) | 366 | Protein_764 | transposase | - |
| LLE29_RS03925 (LLE29_03925) | - | 753346..754371 (+) | 1026 | Protein_765 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| LLE29_RS03930 (LLE29_03930) | - | 754566..755222 (-) | 657 | WP_003693075.1 | response regulator transcription factor | - |
| LLE29_RS03935 (LLE29_03935) | - | 755219..756988 (-) | 1770 | WP_003699959.1 | histidine kinase | - |
| LLE29_RS03940 (LLE29_03940) | - | 757195..757809 (+) | 615 | WP_003698471.1 | molybdenum cofactor guanylyltransferase | - |
| LLE29_RS03945 (LLE29_03945) | - | 757971..758588 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| LLE29_RS03950 (LLE29_03950) | - | 758596..759459 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| LLE29_RS03955 (LLE29_03955) | - | 759472..759906 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| LLE29_RS03960 (LLE29_03960) | rpe | 760052..760735 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| LLE29_RS03965 (LLE29_03965) | ruvB | 760980..762011 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LLE29_RS03970 (LLE29_03970) | - | 762093..762401 (-) | 309 | WP_002232489.1 | hypothetical protein | - |
| LLE29_RS03975 (LLE29_03975) | - | 762820..764052 (-) | 1233 | WP_003691200.1 | multifunctional CCA addition/repair protein | - |
| LLE29_RS03980 (LLE29_03980) | - | 764131..765759 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| LLE29_RS03985 (LLE29_03985) | - | 765909..766283 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| LLE29_RS03990 (LLE29_03990) | - | 766332..767870 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| LLE29_RS03995 (LLE29_03995) | recR | 767937..768554 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| LLE29_RS04000 (LLE29_04000) | - | 768610..768888 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| LLE29_RS04005 (LLE29_04005) | - | 769114..770361 (+) | 1248 | WP_003693086.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| LLE29_RS04010 (LLE29_04010) | lolD | 770354..771049 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| LLE29_RS04015 (LLE29_04015) | recD | 771116..772861 (+) | 1746 | WP_003693088.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| LLE29_RS04020 (LLE29_04020) | - | 772933..773579 (-) | 647 | Protein_784 | methyltransferase | - |
| LLE29_RS04025 (LLE29_04025) | - | 773587..774549 (+) | 963 | WP_134994026.1 | transposase | - |
| LLE29_RS04030 (LLE29_04030) | - | 774678..775138 (-) | 461 | Protein_786 | methyltransferase | - |
| LLE29_RS04035 (LLE29_04035) | lon | 775390..777852 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| LLE29_RS04040 (LLE29_04040) | - | 778034..778303 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| LLE29_RS04045 (LLE29_04045) | - | 778480..778914 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| LLE29_RS04050 (LLE29_04050) | - | 778907..780214 (-) | 1308 | WP_003697095.1 | homoserine dehydrogenase | - |
| LLE29_RS04055 (LLE29_04055) | - | 780410..780781 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| LLE29_RS04060 (LLE29_04060) | - | 780858..782780 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| LLE29_RS04065 (LLE29_04065) | - | 782767..783162 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| LLE29_RS04070 (LLE29_04070) | - | 783253..783765 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| LLE29_RS04075 (LLE29_04075) | - | 784210..784905 (-) | 696 | WP_020996819.1 | DUF4400 domain-containing protein | - |
| LLE29_RS04080 (LLE29_04080) | traD | 784895..786937 (-) | 2043 | WP_229930409.1 | type IV conjugative transfer system coupling protein TraD | - |
| LLE29_RS04085 (LLE29_04085) | mobH | 786934..789486 (-) | 2553 | WP_003693100.1 | MobH family relaxase | - |
| LLE29_RS04090 (LLE29_04090) | - | 789483..789962 (-) | 480 | WP_229697881.1 | hypothetical protein | - |
| LLE29_RS04095 (LLE29_04095) | - | 790412..790873 (+) | 462 | WP_003693105.1 | lytic transglycosylase domain-containing protein | - |
| LLE29_RS04100 (LLE29_04100) | - | 790843..791364 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| LLE29_RS04105 (LLE29_04105) | traA | 791420..791716 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| LLE29_RS04110 (LLE29_04110) | traL | 791738..792019 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| LLE29_RS04115 (LLE29_04115) | - | 792016..792681 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| LLE29_RS04120 (LLE29_04120) | - | 792683..793417 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| LLE29_RS04125 (LLE29_04125) | - | 793419..794732 (+) | 1314 | WP_003693116.1 | TrbI/VirB10 family protein | - |
| LLE29_RS04130 (LLE29_04130) | - | 794742..795461 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| LLE29_RS04135 (LLE29_04135) | - | 795458..796039 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| LLE29_RS04140 (LLE29_04140) | traC | 796049..798625 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| LLE29_RS04145 (LLE29_04145) | - | 798653..799201 (+) | 549 | WP_003693124.1 | hypothetical protein | - |
| LLE29_RS04150 (LLE29_04150) | - | 799201..799746 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| LLE29_RS04155 (LLE29_04155) | - | 799755..800411 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| LLE29_RS04160 (LLE29_04160) | - | 800573..801526 (+) | 954 | WP_228841907.1 | TraU family protein | - |
| LLE29_RS04165 (LLE29_04165) | - | 801553..801726 (-) | 174 | WP_228369789.1 | hypothetical protein | - |
| LLE29_RS04170 (LLE29_04170) | trbC | 801811..802293 (+) | 483 | WP_228369788.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LLE29_RS04175 (LLE29_04175) | - | 802290..803534 (+) | 1245 | WP_033909962.1 | hypothetical protein | - |
| LLE29_RS04180 (LLE29_04180) | traN | 803573..805114 (+) | 1542 | WP_229433390.1 | conjugal transfer protein TraN | - |
| LLE29_RS04185 (LLE29_04185) | - | 805101..805526 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| LLE29_RS04190 (LLE29_04190) | - | 805538..806314 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| LLE29_RS04195 (LLE29_04195) | - | 806486..807997 (+) | 1512 | WP_003693144.1 | conjugal transfer protein TraH | - |
| LLE29_RS04200 (LLE29_04200) | - | 808004..810913 (+) | 2910 | WP_229930250.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LLE29_RS04205 (LLE29_04205) | - | 810976..811419 (+) | 444 | WP_080282892.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63125.92 Da Isoelectric Point: 5.8825
>NTDB_id=734988 LLE29_RS04015 WP_003693088.1 771116..772861(+) (recD) [Neisseria gonorrhoeae strain 10794]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=734988 LLE29_RS04015 WP_003693088.1 771116..772861(+) (recD) [Neisseria gonorrhoeae strain 10794]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.484 |
100 |
0.995 |