Detailed information NTG0734962

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4G01_RS07115
• Genome accession: NZ_CP120881
• Coordinates: 1491620..1492624 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NY7583
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1486620..1497624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4G01_RS07085 (P4G01_07090)	fghA	1486712..1487563 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
P4G01_RS07090 (P4G01_07095)	ispF	1487634..1488107 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4G01_RS07095 (P4G01_07100)	truD	1488104..1489171 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
P4G01_RS07100 (P4G01_07105)	surE	1489159..1489908 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4G01_RS07105 (P4G01_07110)	-	1489941..1490576 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4G01_RS07110 (P4G01_07115)	-	1490622..1491515 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4G01_RS07115 (P4G01_07120)	rpoS	1491620..1492624 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P4G01_RS07120 (P4G01_07125)	fdxA	1493051..1493374 (-)	324	WP_003119354.1	ferredoxin FdxA	-
P4G01_RS07125 (P4G01_07130)	mutS	1493441..1496008 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
P4G01_RS07130 (P4G01_07135)	-	1496134..1497141 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=734962 P4G01_RS07115 WP_003113871.1 1491620..1492624(+) (rpoS) [Pseudomonas aeruginosa strain NY7583]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=734962 P4G01_RS07115 WP_003113871.1 1491620..1492624(+) (rpoS) [Pseudomonas aeruginosa strain NY7583]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653