Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE29_RS00280 Genome accession   NZ_CP106780
Coordinates   53180..53701 (-) Length   173 a.a.
NCBI ID   WP_263055800.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10794     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48180..58701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE29_RS00250 (LLE29_00250) - 48849..49238 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  LLE29_RS00260 (LLE29_00260) - 49401..49780 (-) 380 Protein_49 VOC family protein -
  LLE29_RS00265 (LLE29_00265) carA 49834..50967 (-) 1134 WP_003699436.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  LLE29_RS00270 (LLE29_00270) pilC 52460..53214 (-) 755 Protein_51 PilC family type IV pilus tip adhesin -
  LLE29_RS00280 (LLE29_00280) pilC 53180..53701 (-) 522 WP_263055800.1 pilus assembly protein Machinery gene
  LLE29_RS00285 (LLE29_00285) pilC 53691..54149 (-) 459 WP_263055801.1 pilus assembly protein Machinery gene
  LLE29_RS00290 (LLE29_00290) pilC 54125..54571 (-) 447 WP_263055802.1 hypothetical protein Machinery gene
  LLE29_RS00295 (LLE29_00295) pilC 54761..55531 (-) 771 WP_263055803.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE29_RS00300 (LLE29_00300) apbC 57525..58604 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19371.57 Da        Isoelectric Point: 9.7447

>NTDB_id=734962 LLE29_RS00280 WP_263055800.1 53180..53701(-) (pilC) [Neisseria gonorrhoeae strain 10794]
MRLDLSKTNGNYPAAASLFDVKDGDKKGKNRVEVELGYTVGTPQIGKTQNGTYSAFLASGYAAKQIDDSTNKTALYVYDL
KDTLGTDCENRSEGRQGRAFVPPLVDKDLDGIVDIAYAGDRGGNMYRFDLSGDNPSKWTVRTFPRHKTDYLRARRFPTGR
QTRGHLRYGQRFE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=734962 LLE29_RS00280 WP_263055800.1 53180..53701(-) (pilC) [Neisseria gonorrhoeae strain 10794]
ATGCGCCTTGATTTAAGCAAAACCAACGGCAATTATCCAGCCGCCGCTTCCCTGTTTGATGTCAAAGATGGCGATAAGAA
AGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACTGTCGGCACGCCGCAAATCGGCAAAACCCAAAACGGCACATACT
CCGCCTTCCTCGCTTCCGGTTATGCGGCTAAACAAATTGACGACTCAACAAATAAAACCGCGCTGTATGTGTATGATTTG
AAAGACACCTTAGGTACCGATTGCGAAAATCGAAGTGAAGGACGGCAAGGGCGGGCTTTCGTCCCCCCGCTGGTGGATAA
AGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGGCGACA
ATCCGTCCAAATGGACTGTACGCACTTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGA
CAAACGCGTGGTCATCTTCGGTACGGGCAGCGATTTGAGTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(3-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

63.194

83.237

0.526