Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | LLE38_RS04005 | Genome accession | NZ_CP106777 |
| Coordinates | 770676..772421 (+) | Length | 581 a.a. |
| NCBI ID | WP_003693088.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10727 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 735504..810982 | 770676..772421 | within | 0 |
| IS/Tn | 773108..774109 | 770676..772421 | flank | 687 |
Gene organization within MGE regions
Location: 735504..810982
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLE38_RS03835 (LLE38_03835) | - | 735504..736574 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| LLE38_RS03840 (LLE38_03840) | - | 736783..737562 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| LLE38_RS03845 (LLE38_03845) | - | 738154..738363 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| LLE38_RS03850 (LLE38_03850) | dinB | 738462..739520 (+) | 1059 | WP_003688698.1 | DNA polymerase IV | - |
| LLE38_RS03855 (LLE38_03855) | rep | 739590..741605 (-) | 2016 | WP_229940689.1 | DNA helicase Rep | - |
| LLE38_RS03860 (LLE38_03860) | aroD | 741625..742389 (-) | 765 | WP_229940690.1 | type I 3-dehydroquinate dehydratase | - |
| LLE38_RS03865 (LLE38_03865) | recA | 742589..743635 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| LLE38_RS03870 (LLE38_03870) | - | 744288..744623 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LLE38_RS03875 (LLE38_03875) | dnaX | 744704..746827 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| LLE38_RS03880 (LLE38_03880) | mutL | 746922..748886 (-) | 1965 | WP_003699962.1 | DNA mismatch repair endonuclease MutL | - |
| LLE38_RS03885 (LLE38_03885) | - | 749030..749215 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| LLE38_RS03890 (LLE38_03890) | - | 749226..749894 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| LLE38_RS03895 (LLE38_03895) | - | 749894..750607 (+) | 714 | WP_003693072.1 | tol-pal system YbgF family protein | - |
| LLE38_RS03900 (LLE38_03900) | purE | 750655..751140 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| LLE38_RS03905 (LLE38_03905) | - | 751352..752160 (-) | 809 | Protein_764 | transposase | - |
| LLE38_RS03910 (LLE38_03910) | - | 752534..752899 (+) | 366 | Protein_765 | transposase | - |
| LLE38_RS03915 (LLE38_03915) | - | 752906..753931 (+) | 1026 | Protein_766 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| LLE38_RS03920 (LLE38_03920) | - | 754126..754782 (-) | 657 | WP_003693075.1 | response regulator transcription factor | - |
| LLE38_RS03925 (LLE38_03925) | - | 754779..756548 (-) | 1770 | WP_003699959.1 | histidine kinase | - |
| LLE38_RS03930 (LLE38_03930) | - | 756755..757369 (+) | 615 | WP_003698471.1 | molybdenum cofactor guanylyltransferase | - |
| LLE38_RS03935 (LLE38_03935) | - | 757531..758148 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| LLE38_RS03940 (LLE38_03940) | - | 758156..759019 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| LLE38_RS03945 (LLE38_03945) | - | 759032..759466 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| LLE38_RS03950 (LLE38_03950) | rpe | 759612..760295 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| LLE38_RS03955 (LLE38_03955) | ruvB | 760540..761571 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LLE38_RS03960 (LLE38_03960) | - | 761653..761961 (-) | 309 | WP_002232489.1 | hypothetical protein | - |
| LLE38_RS03965 (LLE38_03965) | - | 762380..763612 (-) | 1233 | WP_003691200.1 | multifunctional CCA addition/repair protein | - |
| LLE38_RS03970 (LLE38_03970) | - | 763691..765319 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| LLE38_RS03975 (LLE38_03975) | - | 765469..765843 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| LLE38_RS03980 (LLE38_03980) | - | 765892..767430 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| LLE38_RS03985 (LLE38_03985) | recR | 767497..768114 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| LLE38_RS03990 (LLE38_03990) | - | 768170..768448 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| LLE38_RS03995 (LLE38_03995) | - | 768674..769921 (+) | 1248 | WP_003693086.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| LLE38_RS04000 (LLE38_04000) | lolD | 769914..770609 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| LLE38_RS04005 (LLE38_04005) | recD | 770676..772421 (+) | 1746 | WP_003693088.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| LLE38_RS04010 (LLE38_04010) | - | 772493..773139 (-) | 647 | Protein_785 | methyltransferase | - |
| LLE38_RS04015 (LLE38_04015) | - | 773147..774109 (+) | 963 | WP_263071075.1 | IS110 family transposase | - |
| LLE38_RS04020 (LLE38_04020) | - | 774238..774698 (-) | 461 | Protein_787 | methyltransferase | - |
| LLE38_RS04025 (LLE38_04025) | lon | 774950..777412 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| LLE38_RS04030 (LLE38_04030) | - | 777594..777863 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| LLE38_RS04035 (LLE38_04035) | - | 778040..778474 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| LLE38_RS04040 (LLE38_04040) | - | 778467..779774 (-) | 1308 | WP_003697095.1 | homoserine dehydrogenase | - |
| LLE38_RS04045 (LLE38_04045) | - | 779970..780341 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| LLE38_RS04050 (LLE38_04050) | - | 780418..782340 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| LLE38_RS04055 (LLE38_04055) | - | 782327..782722 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| LLE38_RS04060 (LLE38_04060) | - | 782813..783325 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| LLE38_RS04065 (LLE38_04065) | - | 783770..784465 (-) | 696 | WP_020996819.1 | DUF4400 domain-containing protein | - |
| LLE38_RS04070 (LLE38_04070) | traD | 784455..786497 (-) | 2043 | WP_003693097.1 | type IV conjugative transfer system coupling protein TraD | - |
| LLE38_RS04075 (LLE38_04075) | mobH | 786494..789046 (-) | 2553 | WP_003693100.1 | MobH family relaxase | - |
| LLE38_RS04080 (LLE38_04080) | - | 789043..789462 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| LLE38_RS04085 (LLE38_04085) | - | 789972..790433 (+) | 462 | WP_003693105.1 | lytic transglycosylase domain-containing protein | - |
| LLE38_RS04090 (LLE38_04090) | - | 790403..790924 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| LLE38_RS04095 (LLE38_04095) | traA | 790980..791276 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| LLE38_RS04100 (LLE38_04100) | traL | 791298..791579 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| LLE38_RS04105 (LLE38_04105) | - | 791576..792241 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| LLE38_RS04110 (LLE38_04110) | - | 792243..792977 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| LLE38_RS04115 (LLE38_04115) | - | 792979..794292 (+) | 1314 | WP_003693116.1 | TrbI/VirB10 family protein | - |
| LLE38_RS04120 (LLE38_04120) | - | 794302..795021 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| LLE38_RS04125 (LLE38_04125) | - | 795018..795599 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| LLE38_RS04130 (LLE38_04130) | traC | 795609..798185 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| LLE38_RS04135 (LLE38_04135) | - | 798213..798761 (+) | 549 | WP_003693124.1 | hypothetical protein | - |
| LLE38_RS04140 (LLE38_04140) | - | 798761..799306 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| LLE38_RS04145 (LLE38_04145) | - | 799315..799971 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| LLE38_RS04150 (LLE38_04150) | - | 800133..801086 (+) | 954 | WP_228841907.1 | TraU family protein | - |
| LLE38_RS04155 (LLE38_04155) | trbC | 801101..801853 (+) | 753 | WP_033909961.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LLE38_RS04160 (LLE38_04160) | - | 801850..803094 (+) | 1245 | WP_033909962.1 | hypothetical protein | - |
| LLE38_RS04165 (LLE38_04165) | traN | 803133..804674 (+) | 1542 | WP_229433390.1 | conjugal transfer protein TraN | - |
| LLE38_RS04170 (LLE38_04170) | - | 804661..805086 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| LLE38_RS04175 (LLE38_04175) | - | 805098..805874 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| LLE38_RS04180 (LLE38_04180) | - | 806046..807557 (+) | 1512 | WP_003693144.1 | conjugal transfer protein TraH | - |
| LLE38_RS04185 (LLE38_04185) | - | 807564..810476 (+) | 2913 | WP_033911086.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LLE38_RS04190 (LLE38_04190) | - | 810539..810982 (+) | 444 | WP_080281753.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63125.92 Da Isoelectric Point: 5.8825
>NTDB_id=734934 LLE38_RS04005 WP_003693088.1 770676..772421(+) (recD) [Neisseria gonorrhoeae strain 10727]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=734934 LLE38_RS04005 WP_003693088.1 770676..772421(+) (recD) [Neisseria gonorrhoeae strain 10727]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.484 |
100 |
0.995 |