Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LLE38_RS00505 Genome accession   NZ_CP106777
Coordinates   106581..107180 (-) Length   199 a.a.
NCBI ID   WP_229940670.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101581..112180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE38_RS00490 (LLE38_00485) pilQ 103156..105351 (-) 2196 WP_003696681.1 type IV pilus secretin PilQ Machinery gene
  LLE38_RS00495 (LLE38_00490) pilP 105370..105915 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  LLE38_RS00500 (LLE38_00495) - 105933..106580 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  LLE38_RS00505 (LLE38_00500) pilN 106581..107180 (-) 600 WP_229940670.1 PilN domain-containing protein Machinery gene
  LLE38_RS00510 (LLE38_00505) pilM 107183..108298 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  LLE38_RS00515 (LLE38_00510) - 108450..110846 (+) 2397 WP_229940671.1 penicillin-binding protein 1A -
  LLE38_RS00520 (LLE38_00515) yihA 110967..111596 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22241.61 Da        Isoelectric Point: 9.8898

>NTDB_id=734914 LLE38_RS00505 WP_229940670.1 106581..107180(-) (pilN) [Neisseria gonorrhoeae strain 10727]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDTFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAVESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=734914 LLE38_RS00505 WP_229940670.1 106581..107180(-) (pilN) [Neisseria gonorrhoeae strain 10727]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATACCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGTCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.482

100

0.965