Detailed information NTG0734816

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4B34_RS27145
• Genome accession: NZ_CP120859
• Coordinates: 5661226..5662230 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NY4383
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5656226..5667230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4B34_RS27130 (P4B34_27150)	-	5656522..5657505 (-)	984	WP_124074654.1	ATP-binding protein	-
P4B34_RS27135 (P4B34_27155)	mutS	5657842..5660409 (+)	2568	WP_079858790.1	DNA mismatch repair protein MutS	-
P4B34_RS27140 (P4B34_27160)	fdxA	5660476..5660799 (+)	324	WP_003092272.1	ferredoxin FdxA	-
P4B34_RS27145 (P4B34_27165)	rpoS	5661226..5662230 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P4B34_RS27150 (P4B34_27170)	-	5662335..5663228 (-)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4B34_RS27155 (P4B34_27175)	-	5663274..5663909 (-)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4B34_RS27160 (P4B34_27180)	surE	5663942..5664691 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4B34_RS27165 (P4B34_27185)	truD	5664679..5665746 (-)	1068	WP_309258674.1	tRNA pseudouridine(13) synthase TruD	-
P4B34_RS27170 (P4B34_27190)	ispF	5665743..5666216 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4B34_RS27175 (P4B34_27195)	fghA	5666287..5667138 (-)	852	WP_003092349.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=734816 P4B34_RS27145 WP_003113871.1 5661226..5662230(-) (rpoS) [Pseudomonas aeruginosa strain NY4383]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=734816 P4B34_RS27145 WP_003113871.1 5661226..5662230(-) (rpoS) [Pseudomonas aeruginosa strain NY4383]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653