Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE34_RS11920 Genome accession   NZ_CP106769
Coordinates   1949472..1949600 (-) Length   42 a.a.
NCBI ID   WP_263071070.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10524     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944472..1954600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE34_RS10265 (LLE34_10265) - 1945321..1945605 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  LLE34_RS10270 (LLE34_10270) pilC 1946512..1949472 (-) 2961 WP_229944431.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE34_RS11920 pilC 1949472..1949600 (-) 129 WP_263071070.1 hypothetical protein Machinery gene
  LLE34_RS10275 (LLE34_10275) - 1950158..1950550 (+) 393 WP_010360973.1 hypothetical protein -
  LLE34_RS10280 (LLE34_10280) gnd 1950630..1952078 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  LLE34_RS10285 (LLE34_10285) waaA 1952141..1953412 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LLE34_RS10290 (LLE34_10290) - 1953453..1953902 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4883.82 Da        Isoelectric Point: 12.9831

>NTDB_id=734760 LLE34_RS11920 WP_263071070.1 1949472..1949600(-) (pilC) [Neisseria gonorrhoeae strain 10524]
MNKTLKRQVFRHTALYAAILMFSHTGGRGGGRRRRKRINTLL

Nucleotide


Download         Length: 129 bp        

>NTDB_id=734760 LLE34_RS11920 WP_263071070.1 1949472..1949600(-) (pilC) [Neisseria gonorrhoeae strain 10524]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GCGGGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

80.556

85.714

0.69