Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE34_RS10985 Genome accession   NZ_CP106769
Coordinates   2074631..2075008 (-) Length   125 a.a.
NCBI ID   WP_396954013.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10524     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2069631..2080008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE34_RS10965 (LLE34_10965) thiC 2070603..2072504 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  LLE34_RS10970 (LLE34_10970) - 2072993..2073363 (-) 371 Protein_2110 pilin -
  LLE34_RS10975 (LLE34_10975) - 2073403..2073756 (-) 354 Protein_2111 pilin -
  LLE34_RS10980 (LLE34_10980) pilE 2073783..2074199 (-) 417 WP_229930594.1 pilin Machinery gene
  LLE34_RS10985 (LLE34_10985) pilE 2074631..2075008 (-) 378 WP_396954013.1 pilin Machinery gene
  LLE34_RS10990 (LLE34_10990) - 2075034..2075360 (-) 327 Protein_2114 pilin -
  LLE34_RS10995 (LLE34_10995) - 2075379..2075723 (-) 345 Protein_2115 pilin -
  LLE34_RS11000 (LLE34_11000) - 2075727..2076035 (+) 309 Protein_2116 NAD(P)-dependent oxidoreductase -
  LLE34_RS11005 (LLE34_11005) metG 2076110..2078164 (-) 2055 WP_003699323.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13535.24 Da        Isoelectric Point: 9.9426

>NTDB_id=734755 LLE34_RS10985 WP_396954013.1 2074631..2075008(-) (pilE) [Neisseria gonorrhoeae strain 10524]
MSNTSKKSAVTEYYLNHGIWPKDNGDAGVASASKIIGKYVKQVEVAKGVVTATMKSDGVNKEIKGKRLSLWGRREDGSVK
WFCGQPVQRTKDDNDAVTAAAAGKDTTNIDTKHLPSTCRDTSMTN

Nucleotide


Download         Length: 378 bp        

>NTDB_id=734755 LLE34_RS10985 WP_396954013.1 2074631..2075008(-) (pilE) [Neisseria gonorrhoeae strain 10524]
ATTTCAAACACTTCCAAAAAATCAGCCGTCACCGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACGGCGATGC
CGGCGTGGCATCCGCTTCAAAAATCATAGGCAAATATGTTAAGCAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCACAA
TGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAGACTCTCCCTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAA
TGGTTCTGCGGACAGCCGGTTCAGCGCACCAAAGACGACAACGACGCCGTCACCGCCGCCGCCGCCGGCAAAGACACCAC
CAACATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCAATGACAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.881

94.4

0.688
  pilE Neisseria gonorrhoeae MS11

70.69

92.8

0.656