Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE33_RS11195 Genome accession   NZ_CP106767
Coordinates   2110131..2110544 (-) Length   137 a.a.
NCBI ID   WP_229930362.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10610     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105131..2115544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE33_RS11150 (LLE33_11150) - 2105295..2105638 (-) 344 Protein_2149 pilin -
  LLE33_RS11155 (LLE33_11155) - 2105638..2105978 (-) 341 Protein_2150 pilin -
  LLE33_RS11160 (LLE33_11160) - 2105978..2106370 (-) 393 Protein_2151 pilin -
  LLE33_RS11165 (LLE33_11165) - 2106907..2107250 (-) 344 Protein_2152 pilin -
  LLE33_RS11170 (LLE33_11170) - 2107250..2107590 (-) 341 Protein_2153 pilin -
  LLE33_RS11175 (LLE33_11175) - 2107590..2107982 (-) 393 Protein_2154 pilin -
  LLE33_RS11180 (LLE33_11180) - 2108519..2108862 (-) 344 Protein_2155 pilin -
  LLE33_RS11185 (LLE33_11185) - 2108862..2109202 (-) 341 Protein_2156 pilin -
  LLE33_RS11190 (LLE33_11190) - 2109202..2109594 (-) 393 Protein_2157 pilin -
  LLE33_RS11195 (LLE33_11195) pilE 2110131..2110544 (-) 414 WP_229930362.1 pilin Machinery gene
  LLE33_RS11200 (LLE33_11200) lpxC 2110650..2111573 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE33_RS11210 (LLE33_11210) - 2112097..2112453 (-) 357 Protein_2160 pilin -
  LLE33_RS11215 (LLE33_11215) - 2112494..2112832 (-) 339 Protein_2161 pilin -
  LLE33_RS11220 (LLE33_11220) - 2112873..2113088 (-) 216 Protein_2162 pilin -
  LLE33_RS11225 (LLE33_11225) - 2113461..2113592 (-) 132 WP_010356054.1 hypothetical protein -
  LLE33_RS11230 (LLE33_11230) - 2113674..2114362 (-) 689 Protein_2164 SprT family zinc-dependent metalloprotease -
  LLE33_RS11235 (LLE33_11235) - 2114359..2115102 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15074.93 Da        Isoelectric Point: 8.4754

>NTDB_id=734707 LLE33_RS11195 WP_229930362.1 2110131..2110544(-) (pilE) [Neisseria gonorrhoeae strain 10610]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKEVKVENGVVTATMKSDGVNKEIK
DKRLSLWAKRQAGSVKWFCGQPVKRNAKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=734707 LLE33_RS11195 WP_229930362.1 2110131..2110544(-) (pilE) [Neisseria gonorrhoeae strain 10610]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

69.065

100

0.701
  pilE Neisseria gonorrhoeae strain FA1090

69.565

100

0.701