Detailed information NTG0734560

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4B31_RS07205
• Genome accession: NZ_CP120857
• Coordinates: 1528273..1529277 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NY7570
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1523273..1534277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4B31_RS07175 (P4B31_07170)	fghA	1523365..1524216 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
P4B31_RS07180 (P4B31_07175)	ispF	1524287..1524760 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4B31_RS07185 (P4B31_07180)	truD	1524757..1525824 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
P4B31_RS07190 (P4B31_07185)	surE	1525812..1526561 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4B31_RS07195 (P4B31_07190)	-	1526594..1527229 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4B31_RS07200 (P4B31_07195)	-	1527275..1528168 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4B31_RS07205 (P4B31_07200)	rpoS	1528273..1529277 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P4B31_RS07210 (P4B31_07205)	fdxA	1529703..1530026 (-)	324	WP_003119354.1	ferredoxin FdxA	-
P4B31_RS07215 (P4B31_07210)	mutS	1530093..1532660 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
P4B31_RS07220 (P4B31_07215)	-	1532786..1533793 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=734560 P4B31_RS07205 WP_003113871.1 1528273..1529277(+) (rpoS) [Pseudomonas aeruginosa strain NY7570]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=734560 P4B31_RS07205 WP_003113871.1 1528273..1529277(+) (rpoS) [Pseudomonas aeruginosa strain NY7570]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653