Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CPY3401_RS01120 Genome accession   NZ_AP024599
Coordinates   236409..236876 (+) Length   155 a.a.
NCBI ID   WP_195834950.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3401     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 231409..241876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY3401_RS01100 (CPY3401_02230) dnaK 231511..233373 (+) 1863 WP_221062601.1 molecular chaperone DnaK -
  CPY3401_RS01105 (CPY3401_02240) - 233609..234186 (-) 578 Protein_217 hypothetical protein -
  CPY3401_RS01110 (CPY3401_02250) - 234294..235211 (+) 918 WP_221062602.1 O-acetylserine-dependent cystathionine beta-synthase -
  CPY3401_RS01115 (CPY3401_02260) - 235232..236374 (+) 1143 WP_221062603.1 cystathionine gamma-synthase -
  CPY3401_RS01120 (CPY3401_02270) luxS 236409..236876 (+) 468 WP_195834950.1 S-ribosylhomocysteine lyase Regulator
  CPY3401_RS01125 - 237075..238751 (+) 1677 Protein_221 bifunctional metallophosphatase/5'-nucleotidase -
  CPY3401_RS01130 (CPY3401_02300) tlpB 238959..240656 (+) 1698 WP_221062604.1 methyl-accepting chemotaxis protein TlpB -
  CPY3401_RS01135 (CPY3401_02310) - 240687..241469 (+) 783 WP_221062605.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17692.17 Da        Isoelectric Point: 6.6039

>NTDB_id=73451 CPY3401_RS01120 WP_195834950.1 236409..236876(+) (luxS) [Helicobacter pylori strain 3401]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRDEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=73451 CPY3401_RS01120 WP_195834950.1 236409..236876(+) (luxS) [Helicobacter pylori strain 3401]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCCTACACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCACGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
AATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAACAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGAGCGCAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGATGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment