Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   P4831_RS09495 Genome accession   NZ_CP120842
Coordinates   1894548..1896326 (+) Length   592 a.a.
NCBI ID   WP_023164484.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZFM559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889548..1901326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS09475 - 1889636..1891309 (-) 1674 WP_010906146.1 polysaccharide biosynthesis protein -
  P4831_RS09480 - 1891519..1892970 (+) 1452 WP_003130330.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  P4831_RS09485 - 1893049..1893309 (-) 261 WP_277812459.1 hypothetical protein -
  P4831_RS09490 adhP 1893330..1894352 (-) 1023 WP_003130326.1 alcohol dehydrogenase AdhP -
  P4831_RS09495 recQ 1894548..1896326 (+) 1779 WP_023164484.1 DNA helicase RecQ Machinery gene
  P4831_RS09500 yjeM 1896362..1897888 (-) 1527 WP_023189054.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  P4831_RS09505 pepT 1898168..1899409 (-) 1242 WP_023164485.1 peptidase T -
  P4831_RS09510 - 1899438..1900235 (-) 798 WP_010906148.1 DUF1803 domain-containing protein -
  P4831_RS09515 - 1900235..1901179 (-) 945 WP_003130319.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66957.87 Da        Isoelectric Point: 6.4494

>NTDB_id=734508 P4831_RS09495 WP_023164484.1 1894548..1896326(+) (recQ) [Lactococcus lactis strain ZFM559]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDAILLFSPNDLRIRNFLIEQSEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLLSAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
QSQFLQISGVGPVKLKKYGRLFIDKISEYKKS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=734508 P4831_RS09495 WP_023164484.1 1894548..1896326(+) (recQ) [Lactococcus lactis strain ZFM559]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCCAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAATCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTATCCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAAG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TACAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAATGTAGTAATTGTCTTGATGAAAGAGAG
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCCAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAGACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTCTTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCCTAAT
TATTGAATCGAAAACAAAAATTTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CAAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCAAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(19-179)

Helicase conserved C-terminal domain (Helicase_C)

(214-322)

RecQ zinc-binding (RecQ_Zn_bind)

(335-396)

HRDC domain (HRDC)

(520-584)

RQC domain (RQC)

(399-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

51.107

99.155

0.507