Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N7922_RS15945 Genome accession   NZ_CP106754
Coordinates   3341956..3342576 (-) Length   206 a.a.
NCBI ID   WP_263097247.1    Uniprot ID   -
Organism   Kosakonia sp. ML.JS2a     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336956..3347576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7922_RS15930 (N7922_15930) helD 3337192..3339246 (-) 2055 WP_263097244.1 DNA helicase IV -
  N7922_RS15935 (N7922_15935) - 3339369..3339815 (+) 447 WP_263097245.1 YccF domain-containing protein -
  N7922_RS15940 (N7922_15940) yccS 3339833..3341959 (+) 2127 WP_263097246.1 YccS family putative transporter -
  N7922_RS15945 (N7922_15945) sxy/tfoX 3341956..3342576 (-) 621 WP_263097247.1 TfoX/Sxy family DNA transformation protein Regulator
  N7922_RS15950 (N7922_15950) sulA 3342794..3343303 (+) 510 WP_263097248.1 SOS-induced cell division inhibitor SulA -
  N7922_RS15955 (N7922_15955) ompA 3343670..3344722 (+) 1053 WP_263097249.1 porin OmpA -
  N7922_RS15960 (N7922_15960) matP 3344800..3345252 (-) 453 WP_263097250.1 macrodomain Ter protein MatP -
  N7922_RS15965 (N7922_15965) - 3345432..3347192 (+) 1761 WP_263097252.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23458.27 Da        Isoelectric Point: 8.8722

>NTDB_id=734501 N7922_RS15945 WP_263097247.1 3341956..3342576(-) (sxy/tfoX) [Kosakonia sp. ML.JS2a]
MEDISHQRIYQSCECLASLGDICYRAHFGGYSLSVDKTVFAMVAGGELYLRACDESAHYTVTRQAPMLMFNKRGRQVSLN
YYFVNERLWSDRALLLELSALSLSAAKQEKIQRTARLRLRDLPNLTFQLEALLHDAGVLDAHTLRLLGAKACWLRLRKMN
QQLSVKVLFALEGAIIGLHEAALPAIRRQELLEWFNELITKGSKPY

Nucleotide


Download         Length: 621 bp        

>NTDB_id=734501 N7922_RS15945 WP_263097247.1 3341956..3342576(-) (sxy/tfoX) [Kosakonia sp. ML.JS2a]
ATGGAAGACATATCACATCAACGGATCTATCAGTCATGCGAATGCCTCGCATCTCTCGGGGATATTTGCTATCGCGCCCA
TTTCGGTGGTTACAGTTTGTCGGTAGACAAAACGGTTTTTGCAATGGTTGCTGGCGGAGAACTTTATCTGCGCGCGTGCG
ATGAAAGTGCACATTATACCGTTACCCGGCAAGCCCCCATGCTGATGTTCAATAAGCGTGGCCGTCAGGTTTCGTTAAAT
TACTACTTCGTGAATGAACGCTTGTGGAGCGATCGCGCATTATTGCTGGAACTTTCTGCGCTTTCGCTCAGTGCAGCGAA
ACAGGAGAAAATACAGCGGACTGCCCGATTGCGCCTGCGCGATTTGCCCAATCTTACTTTCCAGCTTGAGGCTCTGTTAC
ATGACGCCGGGGTACTGGATGCGCATACGCTGCGTTTACTTGGTGCGAAAGCATGTTGGCTCAGATTAAGAAAAATGAAT
CAGCAGCTCAGCGTTAAAGTTCTCTTCGCTCTTGAAGGCGCCATTATTGGTCTTCATGAAGCTGCACTCCCGGCGATCAG
ACGCCAGGAGTTGTTGGAGTGGTTTAATGAACTGATAACAAAGGGGAGCAAGCCTTACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(118-195)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.098

99.515

0.558