Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   N8I74_RS18485 Genome accession   NZ_CP106753
Coordinates   3996086..3997486 (+) Length   466 a.a.
NCBI ID   WP_263124681.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3991086..4002486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS18460 (N8I74_18460) - 3992724..3993704 (+) 981 WP_263124676.1 KpsF/GutQ family sugar-phosphate isomerase -
  N8I74_RS18465 (N8I74_18465) - 3993720..3994244 (+) 525 WP_263124677.1 HAD family hydrolase -
  N8I74_RS18470 (N8I74_18470) lptC 3994259..3994828 (+) 570 WP_263124678.1 LPS export ABC transporter periplasmic protein LptC -
  N8I74_RS18475 (N8I74_18475) lptA 3994809..3995315 (+) 507 WP_263124679.1 lipopolysaccharide transport periplasmic protein LptA -
  N8I74_RS18480 (N8I74_18480) lptB 3995312..3996043 (+) 732 WP_263124680.1 LPS export ABC transporter ATP-binding protein -
  N8I74_RS18485 (N8I74_18485) rpoN/rpoN1 3996086..3997486 (+) 1401 WP_263124681.1 RNA polymerase factor sigma-54 Machinery gene
  N8I74_RS18490 (N8I74_18490) hpf 3997551..3997874 (+) 324 WP_263124682.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  N8I74_RS18495 (N8I74_18495) ptsN 3998035..3998502 (+) 468 WP_263124683.1 PTS IIA-like nitrogen regulatory protein PtsN -
  N8I74_RS18500 (N8I74_18500) hprK 3998514..3999458 (+) 945 WP_263124684.1 HPr(Ser) kinase/phosphatase -
  N8I74_RS18505 (N8I74_18505) rapZ 3999460..4000329 (+) 870 WP_263124685.1 RNase adapter RapZ -
  N8I74_RS18510 (N8I74_18510) - 4000326..4000691 (+) 366 WP_263124686.1 NusG domain II-containing protein -
  N8I74_RS18515 (N8I74_18515) - 4000672..4001211 (+) 540 WP_263124687.1 Gx transporter family protein -
  N8I74_RS18520 (N8I74_18520) - 4001208..4001813 (+) 606 WP_263124688.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51941.95 Da        Isoelectric Point: 4.8602

>NTDB_id=734485 N8I74_RS18485 WP_263124681.1 3996086..3997486(+) (rpoN/rpoN1) [Chitiniphilus purpureus strain CD1]
MKQSLQLKLSQQLNLTPQLQQSIKLLQLSTLEFRQEIERYLVENPLLEAGEDHGESQTSDEPGPDSPADTPLDDYAGDDG
DWSWGSGGGSGGEDDDDFDPAANTARELTLREHLLEQAGLLPVPALDRAVLGLLIDALDDDGFLTQALEEIFAQLPEELV
AETGLELEDLSVALMRIRQFDPIGVGARDVSEALALQLRQLPQDDIRQLALELVEKHLDLLAARDYTRLKKSLKCDDVAL
KAANALITGLNPRPAARWASLSPRYVIPDAIVYKAKGKWRARLNEAARPRFRVNRMYADILQRSEGGVLARELQEARWLV
KSVQQRFDTILRVAEAIVARQHAFFEHGEVAMRPMVLRDIAEELGLHESTISRVTSQKYLHSPRGLFEFKYFFGSHVETE
AGGECSATAIKALIKQLIQNEDKTKPLSDSALAESLSRQGIVVARRTVAKYREAMQIAPVNQRKTL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=734485 N8I74_RS18485 WP_263124681.1 3996086..3997486(+) (rpoN/rpoN1) [Chitiniphilus purpureus strain CD1]
ATGAAGCAGTCTCTCCAGCTCAAGCTGTCGCAGCAGCTCAATCTCACCCCGCAACTGCAGCAGTCGATCAAGCTGCTGCA
GCTCTCCACACTCGAATTCCGTCAGGAGATCGAACGCTACCTGGTGGAGAACCCACTGCTTGAAGCAGGCGAGGACCACG
GCGAGTCCCAGACATCGGACGAACCCGGTCCGGACAGCCCCGCCGACACCCCCCTGGATGACTACGCCGGTGACGACGGC
GACTGGAGCTGGGGCAGCGGCGGAGGCAGCGGCGGCGAAGACGACGACGACTTCGACCCGGCCGCCAACACCGCACGCGA
ACTGACGCTACGCGAGCATCTGCTGGAGCAGGCGGGCCTGCTGCCGGTTCCGGCGCTGGACCGCGCGGTGCTGGGCCTCT
TGATCGACGCGCTCGACGATGATGGTTTCCTCACGCAAGCACTGGAGGAGATCTTCGCGCAGCTGCCCGAGGAACTGGTG
GCCGAGACCGGGCTCGAACTCGAAGACCTGTCGGTCGCGTTGATGCGCATCAGGCAATTCGATCCGATCGGGGTGGGTGC
GCGCGACGTGAGCGAGGCGTTGGCGCTGCAGCTGCGCCAGTTGCCGCAGGATGATATCCGTCAACTTGCGCTGGAATTGG
TCGAGAAGCACCTCGATTTGCTGGCTGCGCGGGACTACACTAGGCTCAAGAAGTCGCTCAAATGCGATGATGTTGCACTC
AAGGCGGCCAATGCGTTGATCACCGGTCTGAATCCACGCCCGGCAGCCAGATGGGCCAGCCTGTCCCCCCGCTACGTGAT
CCCTGATGCCATCGTCTACAAGGCCAAGGGGAAGTGGCGGGCCAGGTTGAATGAGGCAGCGCGGCCGCGTTTCCGGGTCA
ACCGGATGTATGCGGACATCCTGCAACGCAGCGAGGGAGGCGTATTGGCACGGGAGCTGCAGGAGGCGCGATGGCTGGTC
AAGAGCGTGCAGCAGCGCTTTGACACCATCCTGCGTGTGGCTGAAGCGATCGTGGCAAGGCAGCATGCGTTCTTTGAACA
CGGTGAAGTCGCGATGCGGCCGATGGTGCTGCGCGACATCGCCGAAGAGCTTGGCCTGCATGAATCGACGATTTCGCGGG
TGACGAGCCAGAAATACCTGCACAGTCCAAGGGGGCTTTTCGAGTTCAAATACTTCTTTGGCAGCCATGTCGAAACCGAG
GCCGGTGGGGAATGCTCGGCCACGGCGATCAAGGCGCTCATCAAACAGCTGATCCAGAACGAGGACAAGACCAAACCGCT
TTCGGACAGCGCACTCGCGGAGTCGCTGTCACGGCAAGGGATCGTGGTTGCGCGGCGGACCGTTGCCAAGTACCGGGAAG
CGATGCAGATCGCCCCCGTCAACCAGCGCAAAACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(309-464)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(102-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.098

100

0.547