Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N8I74_RS08425 Genome accession   NZ_CP106753
Coordinates   1813192..1814547 (+) Length   451 a.a.
NCBI ID   WP_263126448.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808192..1819547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS08410 (N8I74_08410) flgJ 1808605..1809507 (+) 903 WP_263126445.1 flagellar assembly peptidoglycan hydrolase FlgJ -
  N8I74_RS08415 (N8I74_08415) flgK 1809539..1811728 (+) 2190 WP_263126446.1 flagellar hook-associated protein FlgK -
  N8I74_RS08420 (N8I74_08420) flgL 1811738..1813123 (+) 1386 WP_263126447.1 flagellar hook-associated protein FlgL -
  N8I74_RS08425 (N8I74_08425) radA 1813192..1814547 (+) 1356 WP_263126448.1 DNA repair protein RadA Machinery gene
  N8I74_RS08430 (N8I74_08430) trxA 1814695..1815021 (+) 327 WP_263126449.1 thioredoxin TrxA -
  N8I74_RS08435 (N8I74_08435) rho 1815201..1816451 (+) 1251 WP_263126450.1 transcription termination factor Rho -
  N8I74_RS08440 (N8I74_08440) - 1816547..1816807 (+) 261 WP_263126451.1 type B 50S ribosomal protein L31 -
  N8I74_RS08445 (N8I74_08445) - 1816913..1818535 (+) 1623 WP_263126452.1 glycosyltransferase family 39 protein -
  N8I74_RS08450 (N8I74_08450) - 1818596..1818760 (-) 165 WP_263126453.1 DUF3149 domain-containing protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47860.17 Da        Isoelectric Point: 7.6871

>NTDB_id=734469 N8I74_RS08425 WP_263126448.1 1813192..1814547(+) (radA) [Chitiniphilus purpureus strain CD1]
MSKQKTSYSCQACGATSPKWQGQCPGCGEWNTLVETVADTGATAGRFQSLAADGQIRQLADVETAELPRTATGLDELDRV
LGGGLVPGGVVLIGGDPGIGKSTLLLQAMTRLAINRKVLYVSGEESPQQIALRARRLQLGDAPVALLAEIGLEKILNGLT
QVKPDVAVIDSIQTLYTEALTSAPGSVAQVRECAAQLTRYAKRTGTTILLVGHVTKEGALAGPRVLEHIVDAVLYFEGDT
HSSFRLIRAIKNRFGAVNELGVFAMTDKGLREVSNPSALFLSQHREPVPGSCVLVTQEGSRPMLVEVQALVDDAHSPQPR
RLAVGMEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRIVEPAADLAVLLAIVSSLKNRALPDKLIVFGEVGLAGEVR
PVQRGQERLREAAKLGFTQAIVPKANRPRQAIDGMTITAVERLADAVGAAL

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=734469 N8I74_RS08425 WP_263126448.1 1813192..1814547(+) (radA) [Chitiniphilus purpureus strain CD1]
ATGAGCAAGCAAAAGACCTCCTACAGCTGTCAGGCCTGCGGCGCCACATCCCCCAAATGGCAGGGGCAGTGCCCTGGTTG
CGGCGAGTGGAATACGCTGGTCGAGACGGTTGCCGACACTGGTGCCACTGCCGGGCGGTTCCAGTCGCTGGCCGCCGATG
GCCAGATCCGGCAGCTTGCCGACGTCGAGACTGCTGAACTGCCCCGCACCGCCACCGGCCTTGACGAACTGGACCGGGTG
TTGGGCGGCGGGCTGGTGCCCGGCGGCGTGGTGCTGATCGGTGGCGACCCGGGCATCGGCAAATCGACGCTGTTGCTGCA
GGCGATGACCCGCCTCGCAATCAACCGCAAGGTGCTGTACGTCTCGGGCGAGGAATCCCCGCAACAGATCGCATTGCGCG
CACGGCGCCTGCAGCTGGGCGATGCCCCGGTGGCGCTGCTTGCCGAGATCGGCCTGGAAAAGATCCTGAACGGCCTGACG
CAGGTCAAGCCGGATGTGGCGGTGATCGATTCAATCCAGACGCTTTACACCGAAGCGCTGACCAGCGCGCCCGGCAGCGT
GGCCCAGGTGCGCGAATGTGCGGCGCAGCTGACCCGCTATGCCAAGCGTACCGGCACCACCATCCTGCTGGTCGGCCATG
TCACCAAGGAGGGGGCACTGGCCGGCCCGCGGGTGCTGGAACACATCGTCGACGCGGTGCTTTATTTCGAGGGTGACACC
CATTCGAGCTTCCGGCTGATCCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGCAATGACGGA
CAAGGGCCTGCGCGAGGTGTCCAATCCGTCGGCGCTGTTCCTGTCGCAGCATCGCGAGCCTGTACCGGGCTCGTGCGTGC
TCGTCACCCAGGAGGGCTCCCGCCCGATGCTGGTCGAAGTGCAGGCACTGGTCGACGACGCGCATTCGCCGCAGCCGCGG
CGGCTGGCGGTCGGCATGGAACAGAACCGGCTGGCATTGCTGCTGGCGGTGCTGCATCGCCATGCCGGGATCGCCGCGTT
CGATCAGGACGTATTCATCAATGCTGTCGGCGGCGTGCGCATCGTCGAGCCGGCCGCCGACCTTGCGGTGCTGCTGGCGA
TCGTCTCAAGCCTGAAGAACCGCGCCCTGCCGGACAAGCTCATCGTGTTCGGCGAAGTGGGGCTGGCCGGCGAGGTACGA
CCGGTGCAACGCGGGCAGGAGCGCCTGCGCGAAGCGGCCAAGCTTGGCTTCACCCAGGCCATCGTGCCCAAGGCCAACCG
GCCCAGGCAAGCCATCGACGGCATGACCATCACCGCGGTCGAGCGCCTAGCCGATGCCGTGGGTGCGGCCTTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-218)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.722

100

0.488
  radA Streptococcus mitis NCTC 12261

46.799

100

0.47
  radA Streptococcus mitis SK321

46.799

100

0.47
  radA Streptococcus pneumoniae Rx1

48.821

94.013

0.459
  radA Streptococcus pneumoniae D39

48.821

94.013

0.459
  radA Streptococcus pneumoniae R6

48.821

94.013

0.459
  radA Streptococcus pneumoniae TIGR4

48.821

94.013

0.459