Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OEG80_RS05450 Genome accession   NZ_CP106752
Coordinates   1256026..1256937 (+) Length   303 a.a.
NCBI ID   WP_227673018.1    Uniprot ID   -
Organism   Psychrobacter sp. SC65A.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251026..1261937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG80_RS05435 (SC65A3_01110) - 1251614..1253161 (-) 1548 WP_263242208.1 pitrilysin family protein -
  OEG80_RS05440 (SC65A3_01111) - 1253246..1254727 (-) 1482 WP_263242209.1 pitrilysin family protein -
  OEG80_RS05445 (SC65A3_01112) - 1254973..1255125 (-) 153 WP_263242211.1 hypothetical protein -
  OEG80_RS05450 pilA 1256026..1256937 (+) 912 WP_227673018.1 signal recognition particle-docking protein FtsY Machinery gene
  OEG80_RS05455 (SC65A3_01114) - 1257003..1257575 (+) 573 WP_263242212.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OEG80_RS05460 (SC65A3_01115) - 1257661..1258410 (-) 750 WP_011513810.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OEG80_RS05465 (SC65A3_01116) - 1258764..1259594 (+) 831 WP_011513809.1 ion transporter -
  OEG80_RS05470 (SC65A3_01117) - 1259639..1260940 (-) 1302 WP_263242213.1 AarF/ABC1/UbiB kinase family protein -
  OEG80_RS05475 (SC65A3_01118) aroQ 1261132..1261668 (-) 537 WP_263242214.1 type II 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 32515.40 Da        Isoelectric Point: 5.2418

>NTDB_id=734448 OEG80_RS05450 WP_227673018.1 1256026..1256937(+) (pilA) [Psychrobacter sp. SC65A.3]
MKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVD
ILTPKVAPLIIDSSKKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGH
GSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVLDAGTGQNAINQVELFNK
VVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRAFSPKQFVAALFETDDKE

Nucleotide


Download         Length: 912 bp        

>NTDB_id=734448 OEG80_RS05450 WP_227673018.1 1256026..1256937(+) (pilA) [Psychrobacter sp. SC65A.3]
ATGAAAACCGGCTTGAGTAAGTCGCGTAAGAACTTAGCTGAAGGGATGGTCAGTATCCTTATTGGAGGCAAAGAGATTGA
TGATGAGCTATTAGAAGAGGTTGAAGACCAACTGTTGGTGGCTGATATCGGTGTCAATGCAACCAATCGTATTATCAAAA
GCCTTACTGAGCAGACAGATCGCGGCGATTTAATCTACGCGCATTCACTATACAAGGCATTGCAGACTGAATTGGTCGAT
ATCTTAACGCCGAAAGTTGCGCCGCTTATTATTGATAGCAGCAAAAAACCATTTGTTATCTTGGTCGTAGGCGTGAATGG
CGTAGGTAAAACGACGACTATCGGTAAACTTGCCAAACGTTTGCAAGGCGAGGGTAAGTCTGTGATGTTAGCAGCAGGGG
ATACTTTCCGCGCAGCAGCGACTGAACAGCTACAAATCTGGGGCGAACGCAATAACATTCCAGTTGTGGCGCAAGGTCAT
GGCTCTGATAGTGCATCAGTTATCTTTGATGCCATGCAATCTGCTAAAGCAAAAAATATTGATGTGTTAATTGCCGATAC
TGCTGGACGTTTACAGAATAAAACCCATCTAATGGCAGAGCTCGAAAAAGTCGTACGTGTGATGCGCAAAGCGGATCCAA
GCGCGCCACATGAAGGTATGATTGTGCTTGATGCTGGCACGGGTCAAAATGCCATTAATCAAGTGGAATTATTTAATAAA
GTGGTGCCATTAACCGGAATCACGATTACTAAACTAGACGGAACTGCAAAAGGCGGTGTGGTCTTTAATATTGCCGAAAC
GACAGATGTGCCTATTCGTTATATTGGCGTAGGTGAGTCGATTGATGATCTGCGTGCCTTTAGTCCAAAACAATTTGTCG
CCGCGTTGTTTGAAACTGATGACAAAGAATAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(18-78)

SRP54-type protein, GTPase domain (SRP54)

(97-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.013

98.35

0.512