Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   P4B24_RS30310 Genome accession   NZ_CP120708
Coordinates   6400370..6400966 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain NY7723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6395370..6405966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B24_RS30290 (P4B24_30295) aroK 6396500..6397018 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P4B24_RS30295 (P4B24_30300) pilQ 6397030..6399175 (-) 2146 Protein_5997 type 4a pilus secretin PilQ -
  P4B24_RS30300 (P4B24_30305) comL/pilP 6399229..6399753 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P4B24_RS30305 (P4B24_30310) pilO 6399750..6400373 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P4B24_RS30310 (P4B24_30315) pilN 6400370..6400966 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P4B24_RS30315 (P4B24_30320) pilM 6400966..6402030 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P4B24_RS30320 (P4B24_30325) - 6402215..6404686 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=734432 P4B24_RS30310 WP_003095839.1 6400370..6400966(-) (pilN) [Pseudomonas aeruginosa strain NY7723]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=734432 P4B24_RS30310 WP_003095839.1 6400370..6400966(-) (pilN) [Pseudomonas aeruginosa strain NY7723]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369