Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P4B24_RS30300 Genome accession   NZ_CP120708
Coordinates   6399229..6399753 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY7723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6394229..6404753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B24_RS30285 (P4B24_30290) aroB 6395344..6396450 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  P4B24_RS30290 (P4B24_30295) aroK 6396500..6397018 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P4B24_RS30295 (P4B24_30300) pilQ 6397030..6399175 (-) 2146 Protein_5997 type 4a pilus secretin PilQ -
  P4B24_RS30300 (P4B24_30305) comL/pilP 6399229..6399753 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P4B24_RS30305 (P4B24_30310) pilO 6399750..6400373 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P4B24_RS30310 (P4B24_30315) pilN 6400370..6400966 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P4B24_RS30315 (P4B24_30320) pilM 6400966..6402030 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P4B24_RS30320 (P4B24_30325) - 6402215..6404686 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=734430 P4B24_RS30300 WP_003095836.1 6399229..6399753(-) (comL/pilP) [Pseudomonas aeruginosa strain NY7723]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=734430 P4B24_RS30300 WP_003095836.1 6399229..6399753(-) (comL/pilP) [Pseudomonas aeruginosa strain NY7723]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362